Report of the user requirements and web based access for eResearch workshops

The User Requirements and Web Based Access for eResearch Workshop, organized jointly by NeSC and NCeSS, was held on 19 May 2006. The aim was to identify lessons learned from e-Science projects that would contribute to our capacity to make Grid infrastructures and tools usable and accessible for diverse user communities. Its focus was on providing an opportunity for a pragmatic discussion between e-Science end users and tool builders in order to understand usability challenges, technological options, community-specific content and needs, and methodologies for design and development. We invited members of six UK e-Science projects and one US project, trying as far as possible to pair a user and developer from each project in order to discuss their contrasting perspectives and experiences. Three breakout group sessions covered the topics of user-developer relations, commodification, and functionality. There was also extensive post-meeting discussion, summarized here. Additional information on the workshop, including the agenda, participant list, and talk slides, can be found online at http://www.nesc.ac.uk/esi/events/685/ Reference: NeSC report UKeS-2006-07 available from http://www.nesc.ac.uk/technical_papers/UKeS-2006-07.pd

The ECOSENSUS Project: Co-Evolving Tools, Practices and Open Content for Participatory Natural Resource Management

ECOSENSUS (Electronic/Ecological Collaborative Sensemaking Support System)[www.ecosensus.info] is an ESRC e-Social Science pilot project, using a Participatory Action Research methodology to evolve tools and work practices for collaborative work in environmental and natural resource management between a European-based team, and stakeholders involved in the region of concern, the North Rupununi District of Guyana. To promote long term capacity building in the region and beyond, the project's outputs will be disseminated as open source learning resources. Given the disparities in knowledge and power in such a project, central to our work are issues of stakeholder empowerment in the geographical modelling, interpretation and decision making practices that constitute environmental management. We argue that in e-Science, such factors have yet to receive much attention. This paper reports work accomplished to date: progress towards an environment which integrates GIS modelling with participatory deliberation about the implications of the models, and reactions from the indigenous Amerindians to this tool

Principles and Concepts of Agent-Based Modelling for Developing Geospatial Simulations

The aim of this paper is to outline fundamental concepts and principles of the Agent-Based Modelling (ABM) paradigm, with particular reference to the development of geospatial simulations. The paper begins with a brief definition of modelling, followed by a classification of model types, and a comment regarding a shift (in certain circumstances) towards modelling systems at the individual-level. In particular, automata approaches (e.g. Cellular Automata, CA, and ABM) have been particularly popular, with ABM moving to the fore. A definition of agents and agent-based models is given; identifying their advantages and disadvantages, especially in relation to geospatial modelling. The potential use of agent-based models is discussed, and how-to instructions for developing an agent-based model are provided. Types of simulation / modelling systems available for ABM are defined, supplemented with criteria to consider before choosing a particular system for a modelling endeavour. Information pertaining to a selection of simulation / modelling systems (Swarm, MASON, Repast, StarLogo, NetLogo, OBEUS, AgentSheets and AnyLogic) is provided, categorised by their licensing policy (open source, shareware / freeware and proprietary systems). The evaluation (i.e. verification, calibration, validation and analysis) of agent-based models and their output is examined, and noteworthy applications are discussed.Geographical Information Systems (GIS) are a particularly useful medium for representing model input and output of a geospatial nature. However, GIS are not well suited to dynamic modelling (e.g. ABM). In particular, problems of representing time and change within GIS are highlighted. Consequently, this paper explores the opportunity of linking (through coupling or integration / embedding) a GIS with a simulation / modelling system purposely built, and therefore better suited to supporting the requirements of ABM. This paper concludes with a synthesis of the discussion that has proceeded. The aim of this paper is to outline fundamental concepts and principles of the Agent-Based Modelling (ABM) paradigm, with particular reference to the development of geospatial simulations. The paper begins with a brief definition of modelling, followed by a classification of model types, and a comment regarding a shift (in certain circumstances) towards modelling systems at the individual-level. In particular, automata approaches (e.g. Cellular Automata, CA, and ABM) have been particularly popular, with ABM moving to the fore. A definition of agents and agent-based models is given; identifying their advantages and disadvantages, especially in relation to geospatial modelling. The potential use of agent-based models is discussed, and how-to instructions for developing an agent-based model are provided. Types of simulation / modelling systems available for ABM are defined, supplemented with criteria to consider before choosing a particular system for a modelling endeavour. Information pertaining to a selection of simulation / modelling systems (Swarm, MASON, Repast, StarLogo, NetLogo, OBEUS, AgentSheets and AnyLogic) is provided, categorised by their licensing policy (open source, shareware / freeware and proprietary systems). The evaluation (i.e. verification, calibration, validation and analysis) of agent-based models and their output is examined, and noteworthy applications are discussed.Geographical Information Systems (GIS) are a particularly useful medium for representing model input and output of a geospatial nature. However, GIS are not well suited to dynamic modelling (e.g. ABM). In particular, problems of representing time and change within GIS are highlighted. Consequently, this paper explores the opportunity of linking (through coupling or integration / embedding) a GIS with a simulation / modelling system purposely built, and therefore better suited to supporting the requirements of ABM. This paper concludes with a synthesis of the discussion that has proceeded

Web and knowledge-based decision support system for measurement uncertainty evaluation

This thesis was submitted for the degree of Doctor of Philosophy and awarded by Brunel UniversityIn metrology, measurement uncertainty is understood as a range in which the true value of the measurement is likely to fall in. The recent years have seen a rapid development in evaluation of measurement uncertainty. ISO Guide to the Expression of Uncertainty in Measurement (GUM 1995) is the primary guiding document for measurement uncertainty. More recently, the Supplement 1 to the "Guide to the expression of uncertainty in measurement" – Propagation of distributions using a Monte Carlo method (GUM SP1) was published in November 2008. A number of software tools for measurement uncertainty have been developed and made available based on these two documents. The current software tools are mainly desktop applications utilising numeric computation with limited mathematical model handling capacity. A novel and generic web-based application, web-based Knowledge-Based Decision Support System (KB-DSS), has been proposed and developed in this research for measurement uncertainty evaluation. A Model-View-Controller architecture pattern is used for the proposed system. Under this general architecture, a web-based KB-DSS is developed based on an integration of the Expert System and Decision Support System approach. In the proposed uncertainty evaluation system, three knowledge bases as sub-systems are developed to implement the evaluation for measurement uncertainty. The first sub-system, the Measurement Modelling Knowledge Base (MMKB), assists the user in establishing the appropriate mathematical model for the measurand, a critical process for uncertainty evaluation. The second sub-system, GUM Framework Knowledge Base, carries out the uncertainty evaluation process based on the GUM Uncertainty Framework using symbolic computation, whilst the third sub-system, GUM SP1 MCM Framework Knowledge Base, conducts the uncertainty calculation according to the GUM SP1 Framework numerically based on Monte Carlo Method. The design and implementation of the proposed system and sub-systems are discussed in the thesis, supported by elaboration of the implementation steps and examples. Discussions and justifications on the technologies and approaches used for the sub-systems and their components are also presented. These include Drools, Oracle database, Java, JSP, Java Transfer Object, AJAX and Matlab. The proposed web-based KB-DSS has been evaluated through case studies and the performance of the system has been validated by the example results. As an established methodology and practical tool, the research will make valuable contributions to the field of measurement uncertainty evaluation.Brunel Universit

A Model-Driven Approach for Business Process Management

The Business Process Management is a common mechanism recommended by a high number of standards for the management of companies and organizations. In software companies this practice is every day more accepted and companies have to assume it, if they want to be competitive. However, the effective definition of these processes and mainly their maintenance and execution are not always easy tasks. This paper presents an approach based on the Model-Driven paradigm for Business Process Management in software companies. This solution offers a suitable mechanism that was implemented successfully in different companies with a tool case named NDTQ-Framework.Ministerio de Educación y Ciencia TIN2010-20057-C03-02Junta de Andalucía TIC-578

JMT – Performance Engineering Tools for System Modeling

We present the Java Modelling Tools (JMT) suite, an integrated framework of Java tools for performance evaluation of computer systems using queueing models. The suite offers a rich user interface that simplifies the definition of performance models by means of wizard dialogs and of a graphical design workspace. The performance evaluation features of JMT span a wide range of state-of-the-art methodologies including discrete-event simulation, mean value analysis of product-form networks, analytical identification of bottleneck resources in multiclass environments, and workload characterization with fuzzy clustering. The discrete-event simulator supports several advanced modeling features such as finite capacity regions, load-dependent service times, bursty processes, fork-and-join nodes, and implements spectral estimation for analysis of simulative results. The suite is open-source, released under the GNU general public license (GPL), and it is available for free download at http://jmt.sourceforge.net