Decidability Issues for Petri Nets

This is a survey of some decidability results for Petri nets, covering the last three decades. The presentation is structured around decidability of specific properties, various behavioural equivalences and finally the model checking problem for temporal logics

On Role Logic

We present role logic, a notation for describing properties of relational structures in shape analysis, databases, and knowledge bases. We construct role logic using the ideas of de Bruijn's notation for lambda calculus, an encoding of first-order logic in lambda calculus, and a simple rule for implicit arguments of unary and binary predicates. The unrestricted version of role logic has the expressive power of first-order logic with transitive closure. Using a syntactic restriction on role logic formulas, we identify a natural fragment RL^2 of role logic. We show that the RL^2 fragment has the same expressive power as two-variable logic with counting C^2 and is therefore decidable. We present a translation of an imperative language into the decidable fragment RL^2, which allows compositional verification of programs that manipulate relational structures. In addition, we show how RL^2 encodes boolean shape analysis constraints and an expressive description logic.Comment: 20 pages. Our later SAS 2004 result builds on this wor

Programmability of Chemical Reaction Networks

Motivated by the intriguing complexity of biochemical circuitry within individual cells we study Stochastic Chemical Reaction Networks (SCRNs), a formal model that considers a set of chemical reactions acting on a finite number of molecules in a well-stirred solution according to standard chemical kinetics equations. SCRNs have been widely used for describing naturally occurring (bio)chemical systems, and with the advent of synthetic biology they become a promising language for the design of artificial biochemical circuits. Our interest here is the computational power of SCRNs and how they relate to more conventional models of computation. We survey known connections and give new connections between SCRNs and Boolean Logic Circuits, Vector Addition Systems, Petri Nets, Gate Implementability, Primitive Recursive Functions, Register Machines, Fractran, and Turing Machines. A theme to these investigations is the thin line between decidable and undecidable questions about SCRN behavior

A Decidable Class of Nested Iterated Schemata (extended version)

Many problems can be specified by patterns of propositional formulae depending on a parameter, e.g. the specification of a circuit usually depends on the number of bits of its input. We define a logic whose formulae, called "iterated schemata", allow to express such patterns. Schemata extend propositional logic with indexed propositions, e.g. P_i, P_i+1, P_1, and with generalized connectives, e.g. /\i=1..n or i=1..n (called "iterations") where n is an (unbound) integer variable called a "parameter". The expressive power of iterated schemata is strictly greater than propositional logic: it is even out of the scope of first-order logic. We define a proof procedure, called DPLL*, that can prove that a schema is satisfiable for at least one value of its parameter, in the spirit of the DPLL procedure. However the converse problem, i.e. proving that a schema is unsatisfiable for every value of the parameter, is undecidable so DPLL* does not terminate in general. Still, we prove that it terminates for schemata of a syntactic subclass called "regularly nested". This is the first non trivial class for which DPLL* is proved to terminate. Furthermore the class of regularly nested schemata is the first decidable class to allow nesting of iterations, i.e. to allow schemata of the form /\i=1..n (/\j=1..n ...).Comment: 43 pages, extended version of "A Decidable Class of Nested Iterated Schemata", submitted to IJCAR 200

Linear Temporal Logic and Propositional Schemata, Back and Forth (extended version)

This paper relates the well-known Linear Temporal Logic with the logic of propositional schemata introduced by the authors. We prove that LTL is equivalent to a class of schemata in the sense that polynomial-time reductions exist from one logic to the other. Some consequences about complexity are given. We report about first experiments and the consequences about possible improvements in existing implementations are analyzed.Comment: Extended version of a paper submitted at TIME 2011: contains proofs, additional examples & figures, additional comparison between classical LTL/schemata algorithms up to the provided translations, and an example of how to do model checking with schemata; 36 pages, 8 figure

On the Invariance of G\"odel's Second Theorem with regard to Numberings

The prevalent interpretation of G\"odel's Second Theorem states that a sufficiently adequate and consistent theory does not prove its consistency. It is however not entirely clear how to justify this informal reading, as the formulation of the underlying mathematical theorem depends on several arbitrary formalisation choices. In this paper I examine the theorem's dependency regarding G\"odel numberings. I introduce deviant numberings, yielding provability predicates satisfying L\"ob's conditions, which result in provable consistency sentences. According to the main result of this paper however, these "counterexamples" do not refute the theorem's prevalent interpretation, since once a natural class of admissible numberings is singled out, invariance is maintained.Comment: Forthcoming in The Review of Symbolic Logi

Logic Programming as Constructivism

The features of logic programming that seem unconventional from the viewpoint of classical logic can be explained in terms of constructivistic logic. We motivate and propose a constructivistic proof theory of non-Horn logic programming. Then, we apply this formalization for establishing results of practical interest. First, we show that 'stratification can be motivated in a simple and intuitive way. Relying on similar motivations, we introduce the larger classes of 'loosely stratified' and 'constructively consistent' programs. Second, we give a formal basis for introducing quantifiers into queries and logic programs by defining 'constructively domain independent* formulas. Third, we extend the Generalized Magic Sets procedure to loosely stratified and constructively consistent programs, by relying on a 'conditional fixpoini procedure

The tree equivalence of linear recursion schemes

In the paper, a complete system of transformation rules preserving the tree equivalence and a polynomial-time algorithm deciding the tree equivalence of linear polyadic recursion schemes are proposed. The algorithm is formulated as a sequential transformation process which brings together the schemes in question. In the last step, the tree equivalence problem for the given schemes is reduced to a global flow analysis problem which is solved by an efficient marking algorithm