The Effectiveness of Query-Based Hierarchic Clustering of Documents for Information Retrieval

Hierarchic document clustering has been applied to Information Retrieval (IR) for over three decades. Its introduction to IR was based on the grounds of its potential to improve the effectiveness of IR systems. Central to the issue of improved effectiveness is the Cluster Hypothesis. The hypothesis states that relevant documents tend to be highly similar to each other, and therefore tend to appear in the same clusters. However, previous research has been inconclusive as to whether document clustering does bring improvements. The main motivation for this work has been to investigate methods for the improvement of the effectiveness of document clustering, by challenging some assumptions that implicitly characterise its application. Such assumptions relate to the static manner in which document clustering is typically performed, and include the static application of document clustering prior to querying, and the static calculation of interdocument associations. The type of clustering that is investigated in this thesis is query-based, that is, it incorporates information from the query into the process of generating clusters of documents. Two approaches for incorporating query information into the clustering process are examined: clustering documents which are returned from an IR system in response to a user query (post-retrieval clustering), and clustering documents by using query-sensitive similarity measures. For the first approach, post-retrieval clustering, an analytical investigation into a number of issues that relate to its retrieval effectiveness is presented in this thesis. This is in contrast to most of the research which has employed post-retrieval clustering in the past, where it is mainly viewed as a convenient and efficient means of presenting documents to users. In this thesis, post-retrieval clustering is employed based on its potential to introduce effectiveness improvements compared both to static clustering and best-match IR systems. The motivation for the second approach, the use of query-sensitive measures, stems from the role of interdocument similarities for the validity of the cluster hypothesis. In this thesis, an axiomatic view of the hypothesis is proposed, by suggesting that documents relevant to the same query (co-relevant documents) display an inherent similarity to each other which is dictated by the query itself. Because of this inherent similarity, the cluster hypothesis should be valid for any document collection. Past research has attributed failure to validate the hypothesis for a document collection to characteristics of the collection. Contrary to this, the view proposed in this thesis suggests that failure of a document set to adhere to the hypothesis is attributed to the assumptions made about interdocument similarity. This thesis argues that the query determines the context and the purpose for which the similarity between documents is judged, and it should therefore be incorporated in the similarity calculations. By taking the query into account when calculating interdocument similarities, co-relevant documents can be "forced" to be more similar to each other. This view challenges the typically static nature of interdocument relationships in IR. Specific formulas for the calculation of query-sensitive similarity are proposed in this thesis. Four hierarchic clustering methods and six document collections are used in the experiments. Three main issues are investigated: the effectiveness of hierarchic post-retrieval clustering which uses static similarity measures, the effectiveness of query-sensitive measures at increasing the similarity of pairs of co-relevant documents, and the effectiveness of hierarchic clustering which uses query-sensitive similarity measures. The results demonstrate the effectiveness improvements that are introduced by the use of both approaches of query-based clustering, compared both to the effectiveness of static clustering and to the effectiveness of best-match IR systems. Query-sensitive similarity measures, in particular, introduce significant improvements over the use of static similarity measures for document clustering, and they also significantly improve the structure of the document space in terms of the similarity of pairs of co-relevant documents. The results provide evidence for the effectiveness of hierarchic query-based clustering of documents, and also challenge findings of previous research which had dismissed the potential of hierarchic document clustering as an effective method for information retrieval

Chemoinformatics Research at the University of Sheffield: A History and Citation Analysis

This paper reviews the work of the Chemoinformatics Research Group in the Department of Information Studies at the University of Sheffield, focusing particularly on the work carried out in the period 1985-2002. Four major research areas are discussed, these involving the development of methods for: substructure searching in databases of three-dimensional structures, including both rigid and flexible molecules; the representation and searching of the Markush structures that occur in chemical patents; similarity searching in databases of both two-dimensional and three-dimensional structures; and compound selection and the design of combinatorial libraries. An analysis of citations to 321 publications from the Group shows that it attracted a total of 3725 residual citations during the period 1980-2002. These citations appeared in 411 different journals, and involved 910 different citing organizations from 54 different countries, thus demonstrating the widespread impact of the Group's work

Clustering the information space using top-ranking sentences : a study of user interaction

By considering sentences selected by a query-biased sentence extraction model from the top-retrieved documents, we create a personalised information space which is characterised by the presence of search terms. We cluster this information space, and enable searchers to interact with the resulting clusters. In order to examine whether users can recognise, and benefit from, the clustered organisation, we compare user interaction and performance between an actual clustering and a pseudo-clustering of the information space for completing information seeking tasks. The results provide evidence for the utility and meaningfulness of the clustered organisation

Hierarchical classification for multiple, distributed web databases

The proliferation of online information resources increases the importance of effective and efficient distributed searching. Our research aims to provide an alternative hierarchical categorization and search capability based on a Bayesian network learning algorithm. Our proposed approach, which is grounded on automatic textual analysis of subject content of online web databases, attempts to address the database selection problem by first classifying web databases into a hierarchy of topic categories. The experimental results reported demonstrate that such a classification approach not only effectively reduces the class search space, but also helps to significantly improve the accuracy of classification performance

Parallel computing in information retrieval - An updated review

The progress of parallel computing in Information Retrieval (IR) is reviewed. In particular we stress the importance of the motivation in using parallel computing for Text Retrieval. We analyse parallel IR systems using a classification due to Rasmussen [1] and describe some parallel IR systems. We give a description of the retrieval models used in parallel Information Processing.. We describe areas of research which we believe are needed

Clustering files of chemical structures using the Szekely-Rizzo generalization of Ward's method

Ward's method is extensively used for clustering chemical structures represented by 2D fingerprints. This paper compares Ward clusterings of 14 datasets (containing between 278 and 4332 molecules) with those obtained using the Szekely–Rizzo clustering method, a generalization of Ward's method. The clusters resulting from these two methods were evaluated by the extent to which the various classifications were able to group active molecules together, using a novel criterion of clustering effectiveness. Analysis of a total of 1400 classifications (Ward and Székely–Rizzo clustering methods, 14 different datasets, 5 different fingerprints and 10 different distance coefficients) demonstrated the general superiority of the Székely–Rizzo method. The distance coefficient first described by Soergel performed extremely well in these experiments, and this was also the case when it was used in simulated virtual screening experiments