The theory of classification part 12: building the class hierarchy

The construction of specific object instances and the development of simple class hierarchy are discussed. The class hierarchy development includes recognizable classes, with mixtures of default, abstract and concrete methods. Generators that are extended into flexible object creation functions with initialization values passed to superclass functions, mimicking the behavior of real object-oriented languages. It is shown that the classes that are derived by inheritance give rise to objects of exact types, which match the expected interfaces of their superclasses and the separately-declared interfaces

Automated Protein Structure Classification: A Survey

Classification of proteins based on their structure provides a valuable resource for studying protein structure, function and evolutionary relationships. With the rapidly increasing number of known protein structures, manual and semi-automatic classification is becoming ever more difficult and prohibitively slow. Therefore, there is a growing need for automated, accurate and efficient classification methods to generate classification databases or increase the speed and accuracy of semi-automatic techniques. Recognizing this need, several automated classification methods have been developed. In this survey, we overview recent developments in this area. We classify different methods based on their characteristics and compare their methodology, accuracy and efficiency. We then present a few open problems and explain future directions.Comment: 14 pages, Technical Report CSRG-589, University of Toront

Methods of conceptual clustering and their relation to numerical taxonomy

Artificial Intelligence (AI) methods for machine learning can be viewed as forms of exploratory data analysis, even though they differ markedly from the statistical methods generally connoted by the term. The distinction between methods of machine learning and statistical data analysis is primarily due to differences in the way techniques of each type represent data and structure within data. That is, methods of machine learning are strongly biased toward symbolic (as opposed to numeric) data representations. We explore this difference within a limited context, devoting the bulk of our paper to the explication of conceptual clustering, an extension to the statistically based methods of numerical taxonomy. In conceptual clustering the formation of object clusters is dependent on the quality of 'higher-level' characterizations, termed concepts, of the clusters. The form of concepts used by existing conceptual clustering systems (sets of necessary and sufficient conditions) is described in some detail. This is followed by descriptions of several conceptual clustering techniques, along with sample output. We conclude with a discussion of how alternative concept representations might enhance the effectiveness of future conceptual clustering systems

From Data Topology to a Modular Classifier

This article describes an approach to designing a distributed and modular neural classifier. This approach introduces a new hierarchical clustering that enables one to determine reliable regions in the representation space by exploiting supervised information. A multilayer perceptron is then associated with each of these detected clusters and charged with recognizing elements of the associated cluster while rejecting all others. The obtained global classifier is comprised of a set of cooperating neural networks and completed by a K-nearest neighbor classifier charged with treating elements rejected by all the neural networks. Experimental results for the handwritten digit recognition problem and comparison with neural and statistical nonmodular classifiers are given