12,264 research outputs found
A GPU-accelerated Branch-and-Bound Algorithm for the Flow-Shop Scheduling Problem
Branch-and-Bound (B&B) algorithms are time intensive tree-based exploration
methods for solving to optimality combinatorial optimization problems. In this
paper, we investigate the use of GPU computing as a major complementary way to
speed up those methods. The focus is put on the bounding mechanism of B&B
algorithms, which is the most time consuming part of their exploration process.
We propose a parallel B&B algorithm based on a GPU-accelerated bounding model.
The proposed approach concentrate on optimizing data access management to
further improve the performance of the bounding mechanism which uses large and
intermediate data sets that do not completely fit in GPU memory. Extensive
experiments of the contribution have been carried out on well known FSP
benchmarks using an Nvidia Tesla C2050 GPU card. We compared the obtained
performances to a single and a multithreaded CPU-based execution. Accelerations
up to x100 are achieved for large problem instances
Determining Principal Component Cardinality through the Principle of Minimum Description Length
PCA (Principal Component Analysis) and its variants areubiquitous techniques
for matrix dimension reduction and reduced-dimensionlatent-factor extraction.
One significant challenge in using PCA, is thechoice of the number of principal
components. The information-theoreticMDL (Minimum Description Length) principle
gives objective compression-based criteria for model selection, but it is
difficult to analytically applyits modern definition - NML (Normalized Maximum
Likelihood) - to theproblem of PCA. This work shows a general reduction of NML
prob-lems to lower-dimension problems. Applying this reduction, it boundsthe
NML of PCA, by terms of the NML of linear regression, which areknown.Comment: LOD 201
ADAM: Analysis of Discrete Models of Biological Systems Using Computer Algebra
Background: Many biological systems are modeled qualitatively with discrete
models, such as probabilistic Boolean networks, logical models, Petri nets, and
agent-based models, with the goal to gain a better understanding of the system.
The computational complexity to analyze the complete dynamics of these models
grows exponentially in the number of variables, which impedes working with
complex models. Although there exist sophisticated algorithms to determine the
dynamics of discrete models, their implementations usually require
labor-intensive formatting of the model formulation, and they are oftentimes
not accessible to users without programming skills. Efficient analysis methods
are needed that are accessible to modelers and easy to use. Method: By
converting discrete models into algebraic models, tools from computational
algebra can be used to analyze their dynamics. Specifically, we propose a
method to identify attractors of a discrete model that is equivalent to solving
a system of polynomial equations, a long-studied problem in computer algebra.
Results: A method for efficiently identifying attractors, and the web-based
tool Analysis of Dynamic Algebraic Models (ADAM), which provides this and other
analysis methods for discrete models. ADAM converts several discrete model
types automatically into polynomial dynamical systems and analyzes their
dynamics using tools from computer algebra. Based on extensive experimentation
with both discrete models arising in systems biology and randomly generated
networks, we found that the algebraic algorithms presented in this manuscript
are fast for systems with the structure maintained by most biological systems,
namely sparseness, i.e., while the number of nodes in a biological network may
be quite large, each node is affected only by a small number of other nodes,
and robustness, i.e., small number of attractors
Optimal design of water distribution systems based on entropy and topology
A new multi-objective evolutionary optimization approach for joint topology and pipe size design of water distribution systems is presented. The algorithm proposed considers simultaneously the adequacy of flow and pressure at the demand nodes; the initial construction cost; the network topology; and a measure of hydraulic capacity reliability. The optimization procedure is based on a general measure of hydraulic performance that combines statistical entropy, network connectivity and hydraulic feasibility. The topological properties of the solutions are accounted for and arbitrary assumptions regarding the quality of infeasible solutions are not applied. In other words, both feasible and infeasible solutions participate in the evolutionary processes; solutions survive and reproduce or perish strictly according to their Pareto-optimality. Removing artificial barriers in this way frees the algorithm to evolve optimal solutions quickly. Furthermore, any redundant binary codes that result from crossover or mutation are eliminated gradually in a seamless and generic way that avoids the arbitrary loss of potentially useful genetic material and preserves the quality of the information that is transmitted from one generation to the next. The approach proposed is entirely generic: we have not introduced any additional parameters that require calibration on a case-by-case basis. Detailed and extensive results for two test problems are included that suggest the approach is highly effective. In general, the frontier-optimal solutions achieved include topologies that are fully branched, partially- and fully-looped and, for networks with multiple sources, completely separate sub-networks
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