Evaluation of Colour Pre-processing on Patch-Based Classification of H&E-Stained Images

This paper compares the effects of colour pre-processing on the classification performance of H&E-stained images. Variations in the tissue preparation procedures, acquisition systems, stain conditions and reagents are all source of artifacts that can affect negatively computer-based classification. Pre-processing methods such as colour constancy, transfer and deconvolution have been proposed to compensate the artifacts. In this paper we compare quantitatively the combined effect of six colour pre-processing procedures and 12 colour texture descriptors on patch-based classification of H&E-stained images. We found that colour pre-processing had negative effects on accuracy in most cases – particularly when used with colour descriptors. However, some pre-processing procedures proved beneficial when employed in conjunction with classic texture descriptors such as co-occurrence matrices, Gabor filters and Local Binary Patterns

Texture descriptors applied to digital mammography

Breast cancer is the second cause of death among women cancers. Computer Aided Detection has been demon- strated an useful tool for early diagnosis, a crucial as- pect for a high survival rate. In this context, several re- search works have incorporated texture features in mam- mographic image segmentation and description such as Gray-Level co-occurrence matrices, Local Binary Pat- terns, and many others. This paper presents an approach for breast density classi¯cation based on segmentation and texture feature extraction techniques in order to clas- sify digital mammograms according to their internal tis- sue. The aim of this work is to compare di®erent texture descriptors on the same framework (same algorithms for segmentation and classi¯cation, as well as same images). Extensive results prove the feasibility of the proposed ap- proach.Postprint (published version

Radiomics of Lung Nodules: A Multi-Institutional Study of Robustness and Agreement of Quantitative Imaging Features.

Radiomics is to provide quantitative descriptors of normal and abnormal tissues during classification and prediction tasks in radiology and oncology. Quantitative Imaging Network members are developing radiomic "feature" sets to characterize tumors, in general, the size, shape, texture, intensity, margin, and other aspects of the imaging features of nodules and lesions. Efforts are ongoing for developing an ontology to describe radiomic features for lung nodules, with the main classes consisting of size, local and global shape descriptors, margin, intensity, and texture-based features, which are based on wavelets, Laplacian of Gaussians, Law's features, gray-level co-occurrence matrices, and run-length features. The purpose of this study is to investigate the sensitivity of quantitative descriptors of pulmonary nodules to segmentations and to illustrate comparisons across different feature types and features computed by different implementations of feature extraction algorithms. We calculated the concordance correlation coefficients of the features as a measure of their stability with the underlying segmentation; 68% of the 830 features in this study had a concordance CC of ≥0.75. Pairwise correlation coefficients between pairs of features were used to uncover associations between features, particularly as measured by different participants. A graphical model approach was used to enumerate the number of uncorrelated feature groups at given thresholds of correlation. At a threshold of 0.75 and 0.95, there were 75 and 246 subgroups, respectively, providing a measure for the features' redundancy

Detection of small bowel tumors in endoscopic capsule images by modeling non-gaussianity of texture descriptors

This paper presents an approach to the automatic detection of small bowel tumors by processing endoscopic capsule images. The most significant texture information is selected by using wavelet processing and captured in the image domain from an appropriate synthesized image. Co-occurrence matrices are used to derive texture descriptors by modeling second order statistics of color image levels. These descriptors are then modeled by using third and fourth order moments in order to cope with distributions that tend to become non-Gaussian especially in some pathological cases. The proposed approach is supported by a classifier based on radial basis functions procedure for the characterization of the image regions along the video frames. The whole methodology has been applied on real data and shows that higher order moments can be effective in modeling capsule endoscopic images regarding tumor detection.Centre Algoritm

Colour texture classification from colour filter array images using various colour spaces

International audienceThis paper focuses on the classification of colour textures acquired by single-sensor colour cameras. In such cameras, the Colour Filter Array (CFA) makes each photosensor sensitive to only one colour component, and CFA images must be demosaiced to estimate the final colour images. We show that demosaicing is detrimental to the textural information because it affects colour texture descriptors such as Chromatic Co-occurrence Matrices (CCMs). However, it remains desirable to take advantage of the chromatic information for colour texture classification. This information is incompletely defined in CFA images, in which each pixel is associated to one single colour component. It is hence a challenge to extract standard colour texture descriptors from CFA images without demosaicing. We propose to form a pair of quarter-size colour images directly from CFA images without any estimation, then to compute the CCMs of these quarter-size images. This allows us to compare textures by means of their CCM-based similarity in texture classification or retrieval schemes, with still the ability to use different colour spaces. Experimental results achieved on benchmark colour texture databases show the effectiveness of the proposed approach for texture classification, and a complexity study highlights its computational efficiency

Evaluation of Statistical Features for Medical Image Retrieval

In this paper we present a complete system allowing the classification of medical images in order to detect possible diseases present in them. The proposed method is developed in two distinct stages: calculation of descriptors and their classification. In the first stage we compute a vector of thirty-three statistical features: seven are related to statistics of the first level order, fifteen to that of second level where thirteen are calculated by means of co-occurrence matrices and two with absolute gradient; the last thirteen finally are calculated using run-length matrices. In the second phase, using the descriptors already calculated, there is the actual image classification. Naive Bayes, RBF, Support VectorMa- chine, K-Nearest Neighbor, Random Forest and Random Tree classifiers are used. The results obtained from the proposed system show that the analysis carried out both on textured and on medical images lead to have a high accuracy

Texture descriptor combining fractal dimension and artificial crawlers

Texture is an important visual attribute used to describe images. There are many methods available for texture analysis. However, they do not capture the details richness of the image surface. In this paper, we propose a new method to describe textures using the artificial crawler model. This model assumes that each agent can interact with the environment and each other. Since this swarm system alone does not achieve a good discrimination, we developed a new method to increase the discriminatory power of artificial crawlers, together with the fractal dimension theory. Here, we estimated the fractal dimension by the Bouligand-Minkowski method due to its precision in quantifying structural properties of images. We validate our method on two texture datasets and the experimental results reveal that our method leads to highly discriminative textural features. The results indicate that our method can be used in different texture applications.Comment: 12 pages 9 figures. Paper in press: Physica A: Statistical Mechanics and its Application

Plant image retrieval using color, shape and texture features

We present a content-based image retrieval system for plant image retrieval, intended especially for the house plant identification problem. A plant image consists of a collection of overlapping leaves and possibly flowers, which makes the problem challenging.We studied the suitability of various well-known color, shape and texture features for this problem, as well as introducing some new texture matching techniques and shape features. Feature extraction is applied after segmenting the plant region from the background using the max-flow min-cut technique. Results on a database of 380 plant images belonging to 78 different types of plants show promise of the proposed new techniques and the overall system: in 55% of the queries, the correct plant image is retrieved among the top-15 results. Furthermore, the accuracy goes up to 73% when a 132-image subset of well-segmented plant images are considered