Classification of interstitial lung disease patterns with topological texture features

Topological texture features were compared in their ability to classify morphological patterns known as 'honeycombing' that are considered indicative for the presence of fibrotic interstitial lung diseases in high-resolution computed tomography (HRCT) images. For 14 patients with known occurrence of honey-combing, a stack of 70 axial, lung kernel reconstructed images were acquired from HRCT chest exams. A set of 241 regions of interest of both healthy and pathological (89) lung tissue were identified by an experienced radiologist. Texture features were extracted using six properties calculated from gray-level co-occurrence matrices (GLCM), Minkowski Dimensions (MDs), and three Minkowski Functionals (MFs, e.g. MF.euler). A k-nearest-neighbor (k-NN) classifier and a Multilayer Radial Basis Functions Network (RBFN) were optimized in a 10-fold cross-validation for each texture vector, and the classification accuracy was calculated on independent test sets as a quantitative measure of automated tissue characterization. A Wilcoxon signed-rank test was used to compare two accuracy distributions and the significance thresholds were adjusted for multiple comparisons by the Bonferroni correction. The best classification results were obtained by the MF features, which performed significantly better than all the standard GLCM and MD features (p < 0.005) for both classifiers. The highest accuracy was found for MF.euler (97.5%, 96.6%; for the k-NN and RBFN classifier, respectively). The best standard texture features were the GLCM features 'homogeneity' (91.8%, 87.2%) and 'absolute value' (90.2%, 88.5%). The results indicate that advanced topological texture features can provide superior classification performance in computer-assisted diagnosis of interstitial lung diseases when compared to standard texture analysis methods.Comment: 8 pages, 5 figures, Proceedings SPIE Medical Imaging 201

Evaluation of Statistical Features for Medical Image Retrieval

In this paper we present a complete system allowing the classification of medical images in order to detect possible diseases present in them. The proposed method is developed in two distinct stages: calculation of descriptors and their classification. In the first stage we compute a vector of thirty-three statistical features: seven are related to statistics of the first level order, fifteen to that of second level where thirteen are calculated by means of co-occurrence matrices and two with absolute gradient; the last thirteen finally are calculated using run-length matrices. In the second phase, using the descriptors already calculated, there is the actual image classification. Naive Bayes, RBF, Support VectorMa- chine, K-Nearest Neighbor, Random Forest and Random Tree classifiers are used. The results obtained from the proposed system show that the analysis carried out both on textured and on medical images lead to have a high accuracy

Discriminating small wooded elements in rural landscape from aerial photography: a hybrid pixel/object-based analysis approach

While small, fragmented wooded elements do not represent a large surface area in agricultural landscape, their role in the sustainability of ecological processes is recognized widely. Unfortunately, landscape ecology studies suffer from the lack of methods for automatic detection of these elements. We propose a hybrid approach using both aerial photographs and ancillary data of coarser resolution to automatically discriminate small wooded elements. First, a spectral and textural analysis is performed to identify all the planted-tree areas in the digital photograph. Secondly, an object-orientated spatial analysis using the two data sources and including a multi-resolution segmentation is applied to distinguish between large and small woods, copses, hedgerows and scattered trees. The results show the usefulness of the hybrid approach and the prospects for future ecological applications

Quantitative Ultrasound and B-mode Image Texture Features Correlate with Collagen and Myelin Content in Human Ulnar Nerve Fascicles

We investigate the usefulness of quantitative ultrasound (QUS) and B-mode texture features for characterization of ulnar nerve fascicles. Ultrasound data were acquired from cadaveric specimens using a nominal 30 MHz probe. Next, the nerves were extracted to prepare histology sections. 85 fascicles were matched between the B-mode images and the histology sections. For each fascicle image, we selected an intra-fascicular region of interest. We used histology sections to determine features related to the concentration of collagen and myelin, and ultrasound data to calculate backscatter coefficient (-24.89 dB $\pm$ 8.31), attenuation coefficient (0.92 db/cm-MHz $\pm$ 0.04), Nakagami parameter (1.01 $\pm$ 0.18) and entropy (6.92 $\pm$ 0.83), as well as B-mode texture features obtained via the gray level co-occurrence matrix algorithm. Significant Spearman's rank correlations between the combined collagen and myelin concentrations were obtained for the backscatter coefficient (R=-0.68), entropy (R=-0.51), and for several texture features. Our study demonstrates that QUS may potentially provide information on structural components of nerve fascicles

Multilayer Complex Network Descriptors for Color-Texture Characterization

A new method based on complex networks is proposed for color-texture analysis. The proposal consists on modeling the image as a multilayer complex network where each color channel is a layer, and each pixel (in each color channel) is represented as a network vertex. The network dynamic evolution is accessed using a set of modeling parameters (radii and thresholds), and new characterization techniques are introduced to capt information regarding within and between color channel spatial interaction. An automatic and adaptive approach for threshold selection is also proposed. We conduct classification experiments on 5 well-known datasets: Vistex, Usptex, Outex13, CURet and MBT. Results among various literature methods are compared, including deep convolutional neural networks with pre-trained architectures. The proposed method presented the highest overall performance over the 5 datasets, with 97.7 of mean accuracy against 97.0 achieved by the ResNet convolutional neural network with 50 layers.Comment: 20 pages, 7 figures and 4 table