13,789 research outputs found
Extensive chaos in Rayleigh-BĆ©nard convection
Using large-scale numerical calculations we explore spatiotemporal chaos in Rayleigh-BĆ©nard convection for experimentally relevant conditions. We calculate the spectrum of Lyapunov exponents and the Lyapunov dimension describing the chaotic dynamics of the convective fluid layer at constant thermal driving over a range of finite system sizes. Our results reveal that the dynamics of fluid convection is truly chaotic for experimental conditions as illustrated by a positive leading-order Lyapunov exponent. We also find the chaos to be extensive over the range of finite-sized systems investigated as indicated by a linear scaling between the Lyapunov dimension of the chaotic attractor and the system size
A temporally adaptive hybridized discontinuous Galerkin method for time-dependent compressible flows
The potential of the hybridized discontinuous Galerkin (HDG) method has been
recognized for the computation of stationary flows. Extending the method to
time-dependent problems can, e.g., be done by backward difference formulae
(BDF) or diagonally implicit Runge-Kutta (DIRK) methods. In this work, we
investigate the use of embedded DIRK methods in an HDG solver, including the
use of adaptive time-step control. Numerical results demonstrate the
performance of the method for both linear and nonlinear (systems of)
time-dependent convection-diffusion equations
ULTRA-SHARP nonoscillatory convection schemes for high-speed steady multidimensional flow
For convection-dominated flows, classical second-order methods are notoriously oscillatory and often unstable. For this reason, many computational fluid dynamicists have adopted various forms of (inherently stable) first-order upwinding over the past few decades. Although it is now well known that first-order convection schemes suffer from serious inaccuracies attributable to artificial viscosity or numerical diffusion under high convection conditions, these methods continue to enjoy widespread popularity for numerical heat transfer calculations, apparently due to a perceived lack of viable high accuracy alternatives. But alternatives are available. For example, nonoscillatory methods used in gasdynamics, including currently popular TVD schemes, can be easily adapted to multidimensional incompressible flow and convective transport. This, in itself, would be a major advance for numerical convective heat transfer, for example. But, as is shown, second-order TVD schemes form only a small, overly restrictive, subclass of a much more universal, and extremely simple, nonoscillatory flux-limiting strategy which can be applied to convection schemes of arbitrarily high order accuracy, while requiring only a simple tridiagonal ADI line-solver, as used in the majority of general purpose iterative codes for incompressible flow and numerical heat transfer. The new universal limiter and associated solution procedures form the so-called ULTRA-SHARP alternative for high resolution nonoscillatory multidimensional steady state high speed convective modelling
Numerical Methods for Two-Dimensional Stem Cell Tissue Growth.
Growth of developing and regenerative biological tissues of different cell types is usually driven by stem cells and their local environment. Here, we present a computational framework for continuum tissue growth models consisting of stem cells, cell lineages, and diffusive molecules that regulate proliferation and differentiation through feedback. To deal with the moving boundaries of the models in both open geometries and closed geometries (through polar coordinates) in two dimensions, we transform the dynamic domains and governing equations to fixed domains, followed by solving for the transformation functions to track the interface explicitly. Clustering grid points in local regions for better efficiency and accuracy can be achieved by appropriate choices of the transformation. The equations resulting from the incompressibility of the tissue is approximated by high-order finite difference schemes and is solved using the multigrid algorithms. The numerical tests demonstrate an overall spatiotemporal second-order accuracy of the methods and their capability in capturing large deformations of the tissue boundaries. The methods are applied to two biological systems: stratified epithelia for studying the effects of two different types of stem cell niches and the scaling of a morphogen gradient with the size of the Drosophila imaginal wing disc during growth. Direct simulations of both systems suggest that that the computational framework is robust and accurate, and it can incorporate various biological processes critical to stem cell dynamics and tissue growth
Quantifying Spatiotemporal Chaos in Rayleigh-B\'enard Convection
Using large-scale parallel numerical simulations we explore spatiotemporal
chaos in Rayleigh-B\'enard convection in a cylindrical domain with
experimentally relevant boundary conditions. We use the variation of the
spectrum of Lyapunov exponents and the leading order Lyapunov vector with
system parameters to quantify states of high-dimensional chaos in fluid
convection. We explore the relationship between the time dynamics of the
spectrum of Lyapunov exponents and the pattern dynamics. For chaotic dynamics
we find that all of the Lyapunov exponents are positively correlated with the
leading order Lyapunov exponent and we quantify the details of their response
to the dynamics of defects. The leading order Lyapunov vector is used to
identify topological features of the fluid patterns that contribute
significantly to the chaotic dynamics. Our results show a transition from
boundary dominated dynamics to bulk dominated dynamics as the system size is
increased. The spectrum of Lyapunov exponents is used to compute the variation
of the fractal dimension with system parameters to quantify how the underlying
high-dimensional strange attractor accommodates a range of different chaotic
dynamics
Numerical simulation of electrophoresis separation processes
A new Petrov-Galerkin finite element formulation has been proposed for transient convection-diffusion problems. Most Petrov-Galerkin formulations take into account the spatial discretization, and the weighting functions so developed give satisfactory solutions for steady state problems. Though these schemes can be used for transient problems, there is scope for improvement. The schemes proposed here, which consider temporal as well as spatial discretization, provide improved solutions. Electrophoresis, which involves the motion of charged entities under the influence of an applied electric field, is governed by equations similiar to those encountered in fluid flow problems, i.e., transient convection-diffusion equations. Test problems are solved in electrophoresis and fluid flow. The results obtained are satisfactory. It is also expected that these schemes, suitably adapted, will improve the numerical solutions of the compressible Euler and the Navier-Stokes equations
Inertial Coupling Method for particles in an incompressible fluctuating fluid
We develop an inertial coupling method for modeling the dynamics of
point-like 'blob' particles immersed in an incompressible fluid, generalizing
previous work for compressible fluids. The coupling consistently includes
excess (positive or negative) inertia of the particles relative to the
displaced fluid, and accounts for thermal fluctuations in the fluid momentum
equation. The coupling between the fluid and the blob is based on a no-slip
constraint equating the particle velocity with the local average of the fluid
velocity, and conserves momentum and energy. We demonstrate that the
formulation obeys a fluctuation-dissipation balance, owing to the
non-dissipative nature of the no-slip coupling. We develop a spatio-temporal
discretization that preserves, as best as possible, these properties of the
continuum formulation. In the spatial discretization, the local averaging and
spreading operations are accomplished using compact kernels commonly used in
immersed boundary methods. We find that the special properties of these kernels
make the discrete blob a particle with surprisingly physically-consistent
volume, mass, and hydrodynamic properties. We develop a second-order
semi-implicit temporal integrator that maintains discrete
fluctuation-dissipation balance, and is not limited in stability by viscosity.
Furthermore, the temporal scheme requires only constant-coefficient Poisson and
Helmholtz linear solvers, enabling a very efficient and simple FFT-based
implementation on GPUs. We numerically investigate the performance of the
method on several standard test problems...Comment: Contains a number of corrections and an additional Figure 7 (and
associated discussion) relative to published versio
A high-order semi-explicit discontinuous Galerkin solver for 3D incompressible flow with application to DNS and LES of turbulent channel flow
We present an efficient discontinuous Galerkin scheme for simulation of the
incompressible Navier-Stokes equations including laminar and turbulent flow. We
consider a semi-explicit high-order velocity-correction method for time
integration as well as nodal equal-order discretizations for velocity and
pressure. The non-linear convective term is treated explicitly while a linear
system is solved for the pressure Poisson equation and the viscous term. The
key feature of our solver is a consistent penalty term reducing the local
divergence error in order to overcome recently reported instabilities in
spatially under-resolved high-Reynolds-number flows as well as small time
steps. This penalty method is similar to the grad-div stabilization widely used
in continuous finite elements. We further review and compare our method to
several other techniques recently proposed in literature to stabilize the
method for such flow configurations. The solver is specifically designed for
large-scale computations through matrix-free linear solvers including efficient
preconditioning strategies and tensor-product elements, which have allowed us
to scale this code up to 34.4 billion degrees of freedom and 147,456 CPU cores.
We validate our code and demonstrate optimal convergence rates with laminar
flows present in a vortex problem and flow past a cylinder and show
applicability of our solver to direct numerical simulation as well as implicit
large-eddy simulation of turbulent channel flow at as well as
.Comment: 28 pages, in preparation for submission to Journal of Computational
Physic
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