From Simple to Complex and Ultra-complex Systems:\ud A Paradigm Shift Towards Non-Abelian Systems Dynamics

Atoms, molecules, organisms distinguish layers of reality because of the causal links that govern their behavior, both horizontally (atom-atom, molecule-molecule, organism-organism) and vertically (atom-molecule-organism). This is the first intuition of the theory of levels. Even if the further development of the theory will require imposing a number of qualifications to this initial intuition, the idea of a series of entities organized on different levels of complexity will prove correct. Living systems as well as social systems and the human mind present features remarkably different from those characterizing non-living, simple physical and chemical systems. We propose that super-complexity requires at least four different categorical frameworks, provided by the theories of levels of reality, chronotopoids, (generalized) interactions, and anticipation

From Simple to Complex and Ultra-complex Systems:\ud A Paradigm Shift Towards Non-Abelian Systems Dynamics

Atoms, molecules, organisms distinguish layers of reality because of the causal links that govern their behavior, both horizontally (atom-atom, molecule-molecule, organism-organism) and vertically (atom-molecule-organism). This is the first intuition of the theory of levels. Even if the further development of the theory will require imposing a number of qualifications to this initial intuition, the idea of a series of entities organized on different levels of complexity will prove correct. Living systems as well as social systems and the human mind present features remarkably different from those characterizing non-living, simple physical and chemical systems. We propose that super-complexity requires at least four different categorical frameworks, provided by the theories of levels of reality, chronotopoids, (generalized) interactions, and anticipation

Inductive reasoning about unawareness

We develop a model of games with awareness that allows for differential levels of awareness. We show that, for the standard modal logical interpretations of belief and awareness, a player cannot believe there exist propositions of which he is unaware. Nevertheless, we argue that a boundedly rational individual may regard the possibility that there exist propositions of which she is unaware as being supported by inductive reasoning, based on past experience and consideration of the limited awareness of others. In this paper, we provide a formal representation of inductive reasoning in the context of a dynamic game with awareness. We show that, given differential awareness over time and between players, individuals can derive inductive support for propositions expressing their own unawareness.

Model Predictive Control for Signal Temporal Logic Specification

We present a mathematical programming-based method for model predictive control of cyber-physical systems subject to signal temporal logic (STL) specifications. We describe the use of STL to specify a wide range of properties of these systems, including safety, response and bounded liveness. For synthesis, we encode STL specifications as mixed integer-linear constraints on the system variables in the optimization problem at each step of a receding horizon control framework. We prove correctness of our algorithms, and present experimental results for controller synthesis for building energy and climate control

Linear-Time Temporal Answer Set Programming

[Abstract]: In this survey, we present an overview on (Modal) Temporal Logic Programming in view of its application to Knowledge Representation and Declarative Problem Solving. The syntax of this extension of logic programs is the result of combining usual rules with temporal modal operators, as in Linear-time Temporal Logic (LTL). In the paper, we focus on the main recent results of the non-monotonic formalism called Temporal Equilibrium Logic (TEL) that is defined for the full syntax of LTL but involves a model selection criterion based on Equilibrium Logic, a well known logical characterization of Answer Set Programming (ASP). As a result, we obtain a proper extension of the stable models semantics for the general case of temporal formulas in the syntax of LTL. We recall the basic definitions for TEL and its monotonic basis, the temporal logic of Here-and-There (THT), and study the differences between finite and infinite trace length. We also provide further useful results, such as the translation into other formalisms like Quantified Equilibrium Logic and Second-order LTL, and some techniques for computing temporal stable models based on automata constructions. In the remainder of the paper, we focus on practical aspects, defining a syntactic fragment called (modal) temporal logic programs closer to ASP, and explaining how this has been exploited in the construction of the solver telingo, a temporal extension of the well-known ASP solver clingo that uses its incremental solving capabilities.Xunta de Galicia; ED431B 2019/03We are thankful to the anonymous reviewers for their thorough work and their useful suggestions that have helped to improve the paper. A special thanks goes to Mirosaw Truszczy´nski for his support in improving the quality of our paper. We are especially grateful to David Pearce, whose help and collaboration on Equilibrium Logic was the seed for a great part of the current paper. This work was partially supported by MICINN, Spain, grant PID2020-116201GB-I00, Xunta de Galicia, Spain (GPC ED431B 2019/03), R´egion Pays de la Loire, France, (projects EL4HC and etoiles montantes CTASP), European Union COST action CA-17124, and DFG grants SCHA 550/11 and 15, Germany

Notes on stochastic (bio)-logic gates: the role of allosteric cooperativity

Recent experimental breakthroughs have finally allowed to implement in-vitro reaction kinetics (the so called {\em enzyme based logic}) which code for two-inputs logic gates and mimic the stochastic AND (and NAND) as well as the stochastic OR (and NOR). This accomplishment, together with the already-known single-input gates (performing as YES and NOT), provides a logic base and paves the way to the development of powerful biotechnological devices. The investigation of this field would enormously benefit from a self-consistent, predictive, theoretical framework. Here we formulate a complete statistical mechanical description of the Monod-Wyman-Changeaux allosteric model for both single and double ligand systems, with the purpose of exploring their practical capabilities to express logical operators and/or perform logical operations. Mixing statistical mechanics with logics, and quantitatively our findings with the available biochemical data, we successfully revise the concept of cooperativity (and anti-cooperativity) for allosteric systems, with particular emphasis on its computational capabilities, the related ranges and scaling of the involved parameters and its differences with classical cooperativity (and anti-cooperativity)