Interoperable Technologies for Advanced Petascale Simulations

Our final report on the accomplishments of ITAPS at Stony Brook during period covered by the research award includes component service, interface service and applications. On the component service, we have designed and implemented a robust functionality for the Lagrangian tracking of dynamic interface. We have migrated the hyperbolic, parabolic and elliptic solver from stage-wise second order toward global second order schemes. We have implemented high order coupling between interface propagation and interior PDE solvers. On the interface service, we have constructed the FronTier application programer's interface (API) and its manual page using doxygen. We installed the FronTier functional interface to conform with the ITAPS specifications, especially the iMesh and iMeshP interfaces. On applications, we have implemented deposition and dissolution models with flow and implemented the two-reactant model for a more realistic precipitation at the pore level and its coupling with Darcy level model. We have continued our support to the study of fluid mixing problem for problems in inertial comfinement fusion. We have continued our support to the MHD model and its application to plasma liner implosion in fusion confinement. We have simulated a step in the reprocessing and separation of spent fuels from nuclear power plant fuel rods. We have implemented the fluid-structure interaction for 3D windmill and parachute simulations. We have continued our collaboration with PNNL, BNL, LANL, ORNL, and other SciDAC institutions

Optimisation of LHCb Applications for Multi- and Manycore Job Submission

Nowadays, the Worldwide LHC Computing Grid mainly consists of multi- and manycore processors. The thesis investigates how such resources can be used more efficiently at the example of the LHCb experiment. It analyses how to improve software in terms of memory requirements and concurrency. The research involves the implementation of a moldable job scheduler and a supervised learning algorithm which helps to better predict LHCb workloads

A load-sharing architecture for high performance optimistic simulations on multi-core machines

In Parallel Discrete Event Simulation (PDES), the simulation model is partitioned into a set of distinct Logical Processes (LPs) which are allowed to concurrently execute simulation events. In this work we present an innovative approach to load-sharing on multi-core/multiprocessor machines, targeted at the optimistic PDES paradigm, where LPs are speculatively allowed to process simulation events with no preventive verification of causal consistency, and actual consistency violations (if any) are recovered via rollback techniques. In our approach, each simulation kernel instance, in charge of hosting and executing a specific set of LPs, runs a set of worker threads, which can be dynamically activated/deactivated on the basis of a distributed algorithm. The latter relies in turn on an analytical model that provides indications on how to reassign processor/core usage across the kernels in order to handle the simulation workload as efficiently as possible. We also present a real implementation of our load-sharing architecture within the ROme OpTimistic Simulator (ROOT-Sim), namely an open-source C-based simulation platform implemented according to the PDES paradigm and the optimistic synchronization approach. Experimental results for an assessment of the validity of our proposal are presented as well

Scalable structural index construction for json analytics

JavaScript Object Notation ( JSON) and its variants have gained great popularity in recent years. Unfortunately, the performance of their analytics is often dragged down by the expensive JSON parsing. To address this, recent work has shown that building bitwise indices on JSON data, called structural indices, can greatly accelerate querying. Despite its promise, the existing structural index construction does not scale well as records become larger and more complex, due to its (inherently) sequential construction process and the involvement of costly memory copies that grow as the nesting level increases. To address the above issues, this work introduces Pison – a more memory-efficient structural index constructor with supports of intra-record parallelism. First, Pison features a redesign of the bottleneck step in the existing solution. The new design is not only simpler but more memory-efficient. More importantly, Pison is able to build structural indices for a single bulky record in parallel, enabled by a group of customized parallelization techniques. Finally, Pison is also optimized for better data locality, which is especially critical in the scenario of bulky record processing. Our evaluation using real-world JSON datasets shows that Pison achieves 9.8X speedup (on average) over the existing structural index construction solution for bulky records and 4.6X speedup (on average) of end-to-end performance (indexing plus querying) over a state-of-the-art SIMD-based JSON parser on a 16-core machine

A throughput-latency co-optimised cascade of convolutional neural network classifiers

Convolutional Neural Networks constitute a promi-nent AI model for classification tasks, serving a broad span ofdiverse application domains. To enable their efficient deploymentin real-world tasks, the inherent redundancy of CNNs is fre-quently exploited to eliminate unnecessary computational costs.Driven by the fact that not all inputs require the same amount ofcomputation to drive a confident prediction, multi-precision cas-cade classifiers have been recently introduced. FPGAs comprise apromising platform for the deployment of such input-dependentcomputation models, due to their enhanced customisation ca-pabilities. Current literature, however, is limited to throughput-optimised cascade implementations, employing large batching atthe expense of a substantial latency aggravation prohibiting theirdeployment on real-time scenarios. In this work, we introduce anovel methodology for throughput-latency co-optimised cascadedCNN classification, deployed on a custom FPGA architecturetailored to the target application and deployment platform,with respect to a set of user-specified requirements on accuracyand performance. Our experiments indicate that the proposedapproach achieves comparable throughput gains with relatedstate-of-the-art works, under substantially reduced overhead inlatency, enabling its deployment on latency-sensitive applications

ASCR/HEP Exascale Requirements Review Report

This draft report summarizes and details the findings, results, and recommendations derived from the ASCR/HEP Exascale Requirements Review meeting held in June, 2015. The main conclusions are as follows. 1) Larger, more capable computing and data facilities are needed to support HEP science goals in all three frontiers: Energy, Intensity, and Cosmic. The expected scale of the demand at the 2025 timescale is at least two orders of magnitude -- and in some cases greater -- than that available currently. 2) The growth rate of data produced by simulations is overwhelming the current ability, of both facilities and researchers, to store and analyze it. Additional resources and new techniques for data analysis are urgently needed. 3) Data rates and volumes from HEP experimental facilities are also straining the ability to store and analyze large and complex data volumes. Appropriately configured leadership-class facilities can play a transformational role in enabling scientific discovery from these datasets. 4) A close integration of HPC simulation and data analysis will aid greatly in interpreting results from HEP experiments. Such an integration will minimize data movement and facilitate interdependent workflows. 5) Long-range planning between HEP and ASCR will be required to meet HEP's research needs. To best use ASCR HPC resources the experimental HEP program needs a) an established long-term plan for access to ASCR computational and data resources, b) an ability to map workflows onto HPC resources, c) the ability for ASCR facilities to accommodate workflows run by collaborations that can have thousands of individual members, d) to transition codes to the next-generation HPC platforms that will be available at ASCR facilities, e) to build up and train a workforce capable of developing and using simulations and analysis to support HEP scientific research on next-generation systems.Comment: 77 pages, 13 Figures; draft report, subject to further revisio

High Energy Physics Forum for Computational Excellence: Working Group Reports (I. Applications Software II. Software Libraries and Tools III. Systems)

Computing plays an essential role in all aspects of high energy physics. As computational technology evolves rapidly in new directions, and data throughput and volume continue to follow a steep trend-line, it is important for the HEP community to develop an effective response to a series of expected challenges. In order to help shape the desired response, the HEP Forum for Computational Excellence (HEP-FCE) initiated a roadmap planning activity with two key overlapping drivers -- 1) software effectiveness, and 2) infrastructure and expertise advancement. The HEP-FCE formed three working groups, 1) Applications Software, 2) Software Libraries and Tools, and 3) Systems (including systems software), to provide an overview of the current status of HEP computing and to present findings and opportunities for the desired HEP computational roadmap. The final versions of the reports are combined in this document, and are presented along with introductory material.Comment: 72 page