38,565 research outputs found
Macroservers: An Execution Model for DRAM Processor-In-Memory Arrays
The emergence of semiconductor fabrication technology allowing a tight coupling between high-density DRAM and CMOS logic on the same chip has led to the important new class of Processor-In-Memory (PIM) architectures. Newer developments provide powerful parallel processing capabilities on the chip, exploiting the facility to load wide words in single memory accesses and supporting complex address manipulations in the memory. Furthermore, large arrays of PIMs can be arranged into a massively parallel architecture. In this report, we describe an object-based programming model based on the notion of a macroserver. Macroservers encapsulate a set of variables and methods; threads, spawned by the activation of methods, operate asynchronously on the variables' state space. Data distributions provide a mechanism for mapping large data structures across the memory region of a macroserver, while work distributions allow explicit control of bindings between threads and data. Both data and work distributuions are first-class objects of the model, supporting the dynamic management of data and threads in memory. This offers the flexibility required for fully exploiting the processing power and memory bandwidth of a PIM array, in particular for irregular and adaptive applications. Thread synchronization is based on atomic methods, condition variables, and futures. A special type of lightweight macroserver allows the formulation of flexible scheduling strategies for the access to resources, using a monitor-like mechanism
Asynchronous iterative computations with Web information retrieval structures: The PageRank case
There are several ideas being used today for Web information retrieval, and
specifically in Web search engines. The PageRank algorithm is one of those that
introduce a content-neutral ranking function over Web pages. This ranking is
applied to the set of pages returned by the Google search engine in response to
posting a search query. PageRank is based in part on two simple common sense
concepts: (i)A page is important if many important pages include links to it.
(ii)A page containing many links has reduced impact on the importance of the
pages it links to. In this paper we focus on asynchronous iterative schemes to
compute PageRank over large sets of Web pages. The elimination of the
synchronizing phases is expected to be advantageous on heterogeneous platforms.
The motivation for a possible move to such large scale distributed platforms
lies in the size of matrices representing Web structure. In orders of
magnitude: pages with nonzero elements and bytes
just to store a small percentage of the Web (the already crawled); distributed
memory machines are necessary for such computations. The present research is
part of our general objective, to explore the potential of asynchronous
computational models as an underlying framework for very large scale
computations over the Grid. The area of ``internet algorithmics'' appears to
offer many occasions for computations of unprecedent dimensionality that would
be good candidates for this framework.Comment: 8 pages to appear at ParCo2005 Conference Proceeding
Fast Conical Hull Algorithms for Near-separable Non-negative Matrix Factorization
The separability assumption (Donoho & Stodden, 2003; Arora et al., 2012)
turns non-negative matrix factorization (NMF) into a tractable problem.
Recently, a new class of provably-correct NMF algorithms have emerged under
this assumption. In this paper, we reformulate the separable NMF problem as
that of finding the extreme rays of the conical hull of a finite set of
vectors. From this geometric perspective, we derive new separable NMF
algorithms that are highly scalable and empirically noise robust, and have
several other favorable properties in relation to existing methods. A parallel
implementation of our algorithm demonstrates high scalability on shared- and
distributed-memory machines.Comment: 15 pages, 6 figure
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Preparing sparse solvers for exascale computing.
Sparse solvers provide essential functionality for a wide variety of scientific applications. Highly parallel sparse solvers are essential for continuing advances in high-fidelity, multi-physics and multi-scale simulations, especially as we target exascale platforms. This paper describes the challenges, strategies and progress of the US Department of Energy Exascale Computing project towards providing sparse solvers for exascale computing platforms. We address the demands of systems with thousands of high-performance node devices where exposing concurrency, hiding latency and creating alternative algorithms become essential. The efforts described here are works in progress, highlighting current success and upcoming challenges. This article is part of a discussion meeting issue 'Numerical algorithms for high-performance computational science'
Classification and Geometry of General Perceptual Manifolds
Perceptual manifolds arise when a neural population responds to an ensemble
of sensory signals associated with different physical features (e.g.,
orientation, pose, scale, location, and intensity) of the same perceptual
object. Object recognition and discrimination requires classifying the
manifolds in a manner that is insensitive to variability within a manifold. How
neuronal systems give rise to invariant object classification and recognition
is a fundamental problem in brain theory as well as in machine learning. Here
we study the ability of a readout network to classify objects from their
perceptual manifold representations. We develop a statistical mechanical theory
for the linear classification of manifolds with arbitrary geometry revealing a
remarkable relation to the mathematics of conic decomposition. Novel
geometrical measures of manifold radius and manifold dimension are introduced
which can explain the classification capacity for manifolds of various
geometries. The general theory is demonstrated on a number of representative
manifolds, including L2 ellipsoids prototypical of strictly convex manifolds,
L1 balls representing polytopes consisting of finite sample points, and
orientation manifolds which arise from neurons tuned to respond to a continuous
angle variable, such as object orientation. The effects of label sparsity on
the classification capacity of manifolds are elucidated, revealing a scaling
relation between label sparsity and manifold radius. Theoretical predictions
are corroborated by numerical simulations using recently developed algorithms
to compute maximum margin solutions for manifold dichotomies. Our theory and
its extensions provide a powerful and rich framework for applying statistical
mechanics of linear classification to data arising from neuronal responses to
object stimuli, as well as to artificial deep networks trained for object
recognition tasks.Comment: 24 pages, 12 figures, Supplementary Material
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