Book of Abstracts of the Sixth SIAM Workshop on Combinatorial Scientific Computing

Book of Abstracts of CSC14 edited by Bora UçarInternational audienceThe Sixth SIAM Workshop on Combinatorial Scientific Computing, CSC14, was organized at the Ecole Normale Supérieure de Lyon, France on 21st to 23rd July, 2014. This two and a half day event marked the sixth in a series that started ten years ago in San Francisco, USA. The CSC14 Workshop's focus was on combinatorial mathematics and algorithms in high performance computing, broadly interpreted. The workshop featured three invited talks, 27 contributed talks and eight poster presentations. All three invited talks were focused on two interesting fields of research specifically: randomized algorithms for numerical linear algebra and network analysis. The contributed talks and the posters targeted modeling, analysis, bisection, clustering, and partitioning of graphs, applied in the context of networks, sparse matrix factorizations, iterative solvers, fast multi-pole methods, automatic differentiation, high-performance computing, and linear programming. The workshop was held at the premises of the LIP laboratory of ENS Lyon and was generously supported by the LABEX MILYON (ANR-10-LABX-0070, Université de Lyon, within the program ''Investissements d'Avenir'' ANR-11-IDEX-0007 operated by the French National Research Agency), and by SIAM

Floorplan-Aware High Performance NoC Design

Las actuales arquitecturas de m�ltiples n�cleos como los chip multiprocesadores (CMP) y soluciones multiprocesador para sistemas dentro del chip (MPSoCs) han adoptado a las redes dentro del chip (NoC) como elemento -ptimo para la inter-conexi-n de los diversos elementos de dichos sistemas. En este sentido, fabricantes de CMPs y MPSoCs han adoptado NoCs sencillas, generalmente con una topolog'a en malla o anillo, ya que son suficientes para satisfacer las necesidades de los sistemas actuales. Sin embargo a medida que los requerimientos del sistema -- baja latencia y alto rendimiento -- se hacen m�s exigentes, estas redes tan simples dejan de ser una soluci-n real. As', la comunidad investigadora ha propuesto y analizado NoCs m�s complejas. No obstante, estas soluciones son m�s dif'ciles de implementar -- especialmente los enlaces largos -- haciendo que este tipo de topolog'as complejas sean demasiado costosas o incluso inviables. En esta tesis, presentamos una metodolog'a de dise-o que minimiza la p�rdida de prestaciones de la red debido a su implementaci-n real. Los principales problemas que se encuentran al implementar una NoC son los conmutadores y los enlaces largos. En esta tesis, el conmutador se ha hecho modular, es decir, formado como uni-n de m-dulos m�s peque-os. En nuestro caso, los m-dulos son id�nticos, donde cada m-dulo es capaz de arbitrar, conmutar, y almacenar los mensajes que le llegan. Posteriormente, flexibilizamos la colocaci-n de estos m-dulos en el chip, permitiendo que m-dulos de un mismo conmutador est�n distribuidos por el chip. Esta metodolog'a de dise-o la hemos aplicado a diferentes escenarios. Primeramente, hemos introducido nuestro conmutador modular en NoCs con topolog'as conocidas como la malla 2D. Los resultados muestran como la modularidad y la distribuci-n del conmutador reducen la latencia y el consumo de potencia de la red. En segundo lugar, hemos utilizado nuestra metodolog'a de dise-o para implementar un crossbar distribuidRoca Pérez, A. (2012). Floorplan-Aware High Performance NoC Design [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/17844Palanci

Evaluating technologies and techniques for transitioning hydrodynamics applications to future generations of supercomputers

Current supercomputer development trends present severe challenges for scientific codebases. Moore’s law continues to hold, however, power constraints have brought an end to Dennard scaling, forcing significant increases in overall concurrency. The performance imbalance between the processor and memory sub-systems is also increasing and architectures are becoming significantly more complex. Scientific computing centres need to harness more computational resources in order to facilitate new scientific insights and maintaining their codebases requires significant investments. Centres therefore have to decide how best to develop their applications to take advantage of future architectures. To prevent vendor "lock-in" and maximise investments, achieving portableperformance across multiple architectures is also a significant concern. Efficiently scaling applications will be essential for achieving improvements in science and the MPI (Message Passing Interface) only model is reaching its scalability limits. Hybrid approaches which utilise shared memory programming models are a promising approach for improving scalability. Additionally PGAS (Partitioned Global Address Space) models have the potential to address productivity and scalability concerns. Furthermore, OpenCL has been developed with the aim of enabling applications to achieve portable-performance across a range of heterogeneous architectures. This research examines approaches for achieving greater levels of performance for hydrodynamics applications on future supercomputer architectures. The development of a Lagrangian-Eulerian hydrodynamics application is presented together with its utility for conducting such research. Strategies for improving application performance, including PGAS- and hybrid-based approaches are evaluated at large node-counts on several state-of-the-art architectures. Techniques to maximise the performance and scalability of OpenMP-based hybrid implementations are presented together with an assessment of how these constructs should be combined with existing approaches. OpenCL is evaluated as an additional technology for implementing a hybrid programming model and improving performance-portability. To enhance productivity several tools for automatically hybridising applications and improving process-to-topology mappings are evaluated. Power constraints are starting to limit supercomputer deployments, potentially necessitating the use of more energy efficient technologies. Advanced processor architectures are therefore evaluated as future candidate technologies, together with several application optimisations which will likely be necessary. An FPGA-based solution is examined, including an analysis of how effectively it can be utilised via a high-level programming model, as an alternative to the specialist approaches which currently limit the applicability of this technology

Investigating the use of 3D digitisation for public facing applications in cultural heritage institutions

This thesis contains research into the use of 3D digitisation technologies by cultural heritage institutions in public facing applications. It is particularly interested in those technologies that can be adopted by institutions with limited budget and no previous experience in 3D digitisation. Whilst there has been research in the area of 3D imaging by museums and cultural heritage institutions, the majority is concerned with the use of the technology for academic or professional, curatorial purposes and on technical comparisons of the various technologies used for capture. Similarly, research conducted on the use of 3D models for public facing and public engagement applications has tended to focus on the various capture technologies, while little has been published on processing raw data for public facing applications – a time-consuming and potentially costly procedure. This research will investigate the issues encountered through the entire 3D digitisation workflow, from capture through processing to dissemination, focusing on the specific problems inherent in public facing projects and the heterogeneous and often problematic nature of museum objects. There has been little research published on the efficacy of 3D models both as providers of informational content and as public engagement tools used to fulfil a cultural heritage institution’s public facing remit. This research assesses the utility of interactive 3D models, as well as rendered animations of 3D content used as in-gallery exhibits and disseminated online. It finds that there is a prima facie case for believing that 3D models may be used to further a museum’s engagement and educational aims, and that there is an appetite among the general public for the use of this type of content in cultural heritage applications. The research will also compare a variety of methods for assessing the success of models