Unimodular Random Trees

We consider unimodular random rooted trees (URTs) and invariant forests in Cayley graphs. We show that URTs of bounded degree are the same as the law of the component of the root in an invariant percolation on a regular tree. We use this to give a new proof that URTs are sofic, a result of Elek. We show that ends of invariant forests in the hyperbolic plane converge to ideal boundary points. We also prove that uniform integrability of the degree distribution of a family of finite graphs implies tightness of that family for local convergence, also known as random weak convergence.Comment: 19 pages, 4 figure

Reconstructing pedigrees: some identifiability questions for a recombination-mutation model

Pedigrees are directed acyclic graphs that represent ancestral relationships between individuals in a population. Based on a schematic recombination process, we describe two simple Markov models for sequences evolving on pedigrees - Model R (recombinations without mutations) and Model RM (recombinations with mutations). For these models, we ask an identifiability question: is it possible to construct a pedigree from the joint probability distribution of extant sequences? We present partial identifiability results for general pedigrees: we show that when the crossover probabilities are sufficiently small, certain spanning subgraph sequences can be counted from the joint distribution of extant sequences. We demonstrate how pedigrees that earlier seemed difficult to distinguish are distinguished by counting their spanning subgraph sequences.Comment: 40 pages, 9 figure

Grassmann Integral Representation for Spanning Hyperforests

Given a hypergraph G, we introduce a Grassmann algebra over the vertex set, and show that a class of Grassmann integrals permits an expansion in terms of spanning hyperforests. Special cases provide the generating functions for rooted and unrooted spanning (hyper)forests and spanning (hyper)trees. All these results are generalizations of Kirchhoff's matrix-tree theorem. Furthermore, we show that the class of integrals describing unrooted spanning (hyper)forests is induced by a theory with an underlying OSP(1|2) supersymmetry.Comment: 50 pages, it uses some latex macros. Accepted for publication on J. Phys.

Matrices of forests, analysis of networks, and ranking problems

The matrices of spanning rooted forests are studied as a tool for analysing the structure of networks and measuring their properties. The problems of revealing the basic bicomponents, measuring vertex proximity, and ranking from preference relations / sports competitions are considered. It is shown that the vertex accessibility measure based on spanning forests has a number of desirable properties. An interpretation for the stochastic matrix of out-forests in terms of information dissemination is given.Comment: 8 pages. This article draws heavily from arXiv:math/0508171. Published in Proceedings of the First International Conference on Information Technology and Quantitative Management (ITQM 2013). This version contains some corrections and addition

Random Forests and Networks Analysis

D. Wilson~\cite{[Wi]} in the 1990's described a simple and efficient algorithm based on loop-erased random walks to sample uniform spanning trees and more generally weighted trees or forests spanning a given graph. This algorithm provides a powerful tool in analyzing structures on networks and along this line of thinking, in recent works~\cite{AG1,AG2,ACGM1,ACGM2} we focused on applications of spanning rooted forests on finite graphs. The resulting main conclusions are reviewed in this paper by collecting related theorems, algorithms, heuristics and numerical experiments. A first foundational part on determinantal structures and efficient sampling procedures is followed by four main applications: 1) a random-walk-based notion of well-distributed points in a graph 2) how to describe metastable dynamics in finite settings by means of Markov intertwining dualities 3) coarse graining schemes for networks and associated processes 4) wavelets-like pyramidal algorithms for graph signals.Comment: Survey pape