Towards Distributed Convoy Pattern Mining

Mining movement data to reveal interesting behavioral patterns has gained attention in recent years. One such pattern is the convoy pattern which consists of at least m objects moving together for at least k consecutive time instants where m and k are user-defined parameters. Existing algorithms for detecting convoy patterns, however do not scale to real-life dataset sizes. Therefore a distributed algorithm for convoy mining is inevitable. In this paper, we discuss the problem of convoy mining and analyze different data partitioning strategies to pave the way for a generic distributed convoy pattern mining algorithm.Comment: SIGSPATIAL'15 November 03-06, 2015, Bellevue, WA, US

Vienna FORTRAN: A FORTRAN language extension for distributed memory multiprocessors

Exploiting the performance potential of distributed memory machines requires a careful distribution of data across the processors. Vienna FORTRAN is a language extension of FORTRAN which provides the user with a wide range of facilities for such mapping of data structures. However, programs in Vienna FORTRAN are written using global data references. Thus, the user has the advantage of a shared memory programming paradigm while explicitly controlling the placement of data. The basic features of Vienna FORTRAN are presented along with a set of examples illustrating the use of these features

Automatic Data and Computation Mapping for Distributed-Memory Machines.

Distributed memory parallel computers offer enormous computation power, scalability and flexibility. However, these machines are difficult to program and this limits their widespread use. An important characteristic of these machines is the difference in the access time for data in local versus non-local memory; non-local memory accesses are much slower than local memory accesses. This is also a characteristic of shared memory machines but to a less degree. Therefore it is essential that as far as possible, the data that needs to be accessed by a processor during the execution of the computation assigned to it reside in its local memory rather than in some other processor\u27s memory. Several research projects have concluded that proper mapping of data is key to realizing the performance potential of distributed memory machines. Current language design efforts such as Fortran D and High Performance Fortran (HPF) are based on this. It is our thesis that for many practical codes, it is possible to derive good mappings through a combination of algorithms and systematic procedures. We view mapping as consisting of wo phases, alignment followed by distribution. For the alignment phase we present three constraint-based methods--one based on a linear programming formulation of the problem; the second formulates the alignment problem as a constrained optimization problem using Lagrange multipliers; the third method uses a heuristic to decide which constraints to leave unsatisfied (based on the penalty of increased communication incurred in doing so) in order to find a mapping. In addressing the distribution phase, we have developed two methods that integrate the placement of computation--loop nests in our case--with the mapping of data. For one distributed dimension, our approach finds the best combination of data and computation mapping that results in low communication overhead; this is done by choosing a loop order that allows message vectorization. In the second method, we introduce the distribution preference graph and the operations on this graph allow us to integrate loop restructuring transformations and data mapping. These techniques produce mappings that have been used in efficient hand-coded implementations of several benchmark codes

Directions in parallel programming: HPF, shared virtual memory and object parallelism in pC++

Fortran and C++ are the dominant programming languages used in scientific computation. Consequently, extensions to these languages are the most popular for programming massively parallel computers. We discuss two such approaches to parallel Fortran and one approach to C++. The High Performance Fortran Forum has designed HPF with the intent of supporting data parallelism on Fortran 90 applications. HPF works by asking the user to help the compiler distribute and align the data structures with the distributed memory modules in the system. Fortran-S takes a different approach in which the data distribution is managed by the operating system and the user provides annotations to indicate parallel control regions. In the case of C++, we look at pC++ which is based on a concurrent aggregate parallel model

Compiling Programs for Nonshared Memory Machines

Nonshared-memory parallel computers promise scalable performance for scientific computing needs. Unfortunately, these machines are now difficult to program because the message-passing languages available for them do not reflect the computational models used in designing algorithms. This introduces a semantic gap in the programming process which is difficult for the programmer to fill. The purpose of this research is to show how nonshared-memory machines can be programmed at a higher level than is currently possible. We do this by developing techniques for compiling shared-memory programs for execution on those architectures. The heart of the compilation process is translating references to shared memory into explicit messages between processors. To do this, we first define a formal model for distribution data structures across processor memories. Several abstract results describing the messages needed to execute a program are immediately derived from this formalism. We then develop two distinct forms of analysis to translate these formulas into actual programs. Compile-time analysis is used when enough information is available to the compiler to completely characterize the data sent in the messages. This allows excellent code to be generated for a program. Run-time analysis produces code to examine data references while the program is running. This allows dynamic generation of messages and a correct implementation of the program. While the over-head of the run-time approach is higher than the compile-time approach, run-time analysis is applicable to any program. Performance data from an initial implementation show that both approaches are practical and produce code with acceptable efficiency

Semiannual report, 1 October 1990 - 31 March 1991

Research conducted at the Institute for Computer Applications in Science and Engineering in applied mathematics, numerical analysis, and computer science is summarized

Scotch and libScotch 5.1 User's Guide

127 pagesUser's manualThis document describes the capabilities and operations of Scotch and libScotch, a software package and a software library devoted to static mapping, partitioning, and sparse matrix block ordering of graphs and meshes/hypergraphs. It gives brief descriptions of the algorithms, details the input/output formats, instructions for use, installation procedures, and provides a number of examples. Scotch is distributed as free/libre software, and has been designed such that new partitioning or ordering methods can be added in a straightforward manner. It can therefore be used as a testbed for the easy and quick coding and testing of such new methods, and may also be redistributed, as a library, along with third-party software that makes use of it, either in its original or in updated forms

Automated cache optimisations of stencil computations for partial differential equations

This thesis focuses on numerical methods that solve partial differential equations. Our focal point is the finite difference method, which solves partial differential equations by approximating derivatives with explicit finite differences. These partial differential equation solvers consist of stencil computations on structured grids. Stencils for computing real-world practical applications are patterns often characterised by many memory accesses and non-trivial arithmetic expressions that lead to high computational costs compared to simple stencils used in much prior proof-of-concept work. In addition, the loop nests to express stencils on structured grids may often be complicated. This work is highly motivated by a specific domain of stencil computations where one of the challenges is non-aligned to the structured grid ("off-the-grid") operations. These operations update neighbouring grid points through scatter and gather operations via non-affine memory accesses, such as {A[B[i]]}. In addition to this challenge, these practical stencils often include many computation fields (need to store multiple grid copies), complex data dependencies and imperfect loop nests. In this work, we aim to increase the performance of stencil kernel execution. We study automated cache-memory-dependent optimisations for stencil computations. This work consists of two core parts with their respective contributions.The first part of our work tries to reduce the data movement in stencil computations of practical interest. Data movement is a dominant factor affecting the performance of high-performance computing applications. It has long been a target of optimisations due to its impact on execution time and energy consumption. This thesis tries to relieve this cost by applying temporal blocking optimisations, also known as time-tiling, to stencil computations. Temporal blocking is a well-known technique to enhance data reuse in stencil computations. However, it is rarely used in practical applications but rather in theoretical examples to prove its efficacy. Applying temporal blocking to scientific simulations is more complex. More specifically, in this work, we focus on the application context of seismic and medical imaging. In this area, we often encounter scatter and gather operations due to signal sources and receivers at arbitrary locations in the computational domain. These operations make the application of temporal blocking challenging. We present an approach to overcome this challenge and successfully apply temporal blocking.In the second part of our work, we extend the first part as an automated approach targeting a wide range of simulations modelled with partial differential equations. Since temporal blocking is error-prone, tedious to apply by hand and highly complex to assimilate theoretically and practically, we are motivated to automate its application and automatically generate code that benefits from it. We discuss algorithmic approaches and present a generalised compiler pipeline to automate the application of temporal blocking. These passes are written in the Devito compiler. They are used to accelerate the computation of stencil kernels in areas such as seismic and medical imaging, computational fluid dynamics and machine learning. \href{www.devitoproject.org}{Devito} is a Python package to implement optimised stencil computation (e.g., finite differences, image processing, machine learning) from high-level symbolic problem definitions. Devito builds on \href{www.sympy.org}{SymPy} and employs automated code generation and just-in-time compilation to execute optimised computational kernels on several computer platforms, including CPUs, GPUs, and clusters thereof. We show how we automate temporal blocking code generation without user intervention and often achieve better time-to-solution. We enable domain-specific optimisation through compiler passes and offer temporal blocking gains from a high-level symbolic abstraction. These automated optimisations benefit various computational kernels for solving real-world application problems.Open Acces

Skewed data partition and alignment techniques for compiling programs on distributed memory multicomputers

[[notice]]本書目待補

Portable high-performance superconducting : high-level platform-dependent optimization

Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 1994.Includes bibliographical references (p. 163-172).by Eric Allen Brewer.Ph.D