Size reduction of complex networks preserving modularity

The ubiquity of modular structure in real-world complex networks is being the focus of attention in many trials to understand the interplay between network topology and functionality. The best approaches to the identification of modular structure are based on the optimization of a quality function known as modularity. However this optimization is a hard task provided that the computational complexity of the problem is in the NP-hard class. Here we propose an exact method for reducing the size of weighted (directed and undirected) complex networks while maintaining invariant its modularity. This size reduction allows the heuristic algorithms that optimize modularity for a better exploration of the modularity landscape. We compare the modularity obtained in several real complex-networks by using the Extremal Optimization algorithm, before and after the size reduction, showing the improvement obtained. We speculate that the proposed analytical size reduction could be extended to an exact coarse graining of the network in the scope of real-space renormalization.Comment: 14 pages, 2 figure

Motif-based communities in complex networks

Community definitions usually focus on edges, inside and between the communities. However, the high density of edges within a community determines correlations between nodes going beyond nearest-neighbours, and which are indicated by the presence of motifs. We show how motifs can be used to define general classes of nodes, including communities, by extending the mathematical expression of Newman-Girvan modularity. We construct then a general framework and apply it to some synthetic and real networks

Community structure in directed networks

We consider the problem of finding communities or modules in directed networks. The most common approach to this problem in the previous literature has been simply to ignore edge direction and apply methods developed for community discovery in undirected networks, but this approach discards potentially useful information contained in the edge directions. Here we show how the widely used benefit function known as modularity can be generalized in a principled fashion to incorporate the information contained in edge directions. This in turn allows us to find communities by maximizing the modularity over possible divisions of a network, which we do using an algorithm based on the eigenvectors of the corresponding modularity matrix. This method is shown to give demonstrably better results than previous methods on a variety of test networks, both real and computer-generated.Comment: 5 pages, 3 figure

Detecting communities of triangles in complex networks using spectral optimization

The study of the sub-structure of complex networks is of major importance to relate topology and functionality. Many efforts have been devoted to the analysis of the modular structure of networks using the quality function known as modularity. However, generally speaking, the relation between topological modules and functional groups is still unknown, and depends on the semantic of the links. Sometimes, we know in advance that many connections are transitive and, as a consequence, triangles have a specific meaning. Here we propose the study of the modular structure of networks considering triangles as the building blocks of modules. The method generalizes the standard modularity and uses spectral optimization to find its maximum. We compare the partitions obtained with those resulting from the optimization of the standard modularity in several real networks. The results show that the information reported by the analysis of modules of triangles complements the information of the classical modularity analysis.Comment: Computer Communications (in press

Using Triangles to Improve Community Detection in Directed Networks

In a graph, a community may be loosely defined as a group of nodes that are more closely connected to one another than to the rest of the graph. While there are a variety of metrics that can be used to specify the quality of a given community, one common theme is that flows tend to stay within communities. Hence, we expect cycles to play an important role in community detection. For undirected graphs, the importance of triangles -- an undirected 3-cycle -- has been known for a long time and can be used to improve community detection. In directed graphs, the situation is more nuanced. The smallest cycle is simply two nodes with a reciprocal connection, and using information about reciprocation has proven to improve community detection. Our new idea is based on the four types of directed triangles that contain cycles. To identify communities in directed networks, then, we propose an undirected edge-weighting scheme based on the type of the directed triangles in which edges are involved. We also propose a new metric on quality of the communities that is based on the number of 3-cycles that are split across communities. To demonstrate the impact of our new weighting, we use the standard METIS graph partitioning tool to determine communities and show experimentally that the resulting communities result in fewer 3-cycles being cut. The magnitude of the effect varies between a 10 and 50% reduction, and we also find evidence that this weighting scheme improves a task where plausible ground-truth communities are known.Comment: 10 pages, 3 figure

Laplacian Dynamics and Multiscale Modular Structure in Networks

Most methods proposed to uncover communities in complex networks rely on their structural properties. Here we introduce the stability of a network partition, a measure of its quality defined in terms of the statistical properties of a dynamical process taking place on the graph. The time-scale of the process acts as an intrinsic parameter that uncovers community structures at different resolutions. The stability extends and unifies standard notions for community detection: modularity and spectral partitioning can be seen as limiting cases of our dynamic measure. Similarly, recently proposed multi-resolution methods correspond to linearisations of the stability at short times. The connection between community detection and Laplacian dynamics enables us to establish dynamically motivated stability measures linked to distinct null models. We apply our method to find multi-scale partitions for different networks and show that the stability can be computed efficiently for large networks with extended versions of current algorithms.Comment: New discussions on the selection of the most significant scales and the generalisation of stability to directed network