Proceedings of the second "international Traveling Workshop on Interactions between Sparse models and Technology" (iTWIST'14)

The implicit objective of the biennial "international - Traveling Workshop on Interactions between Sparse models and Technology" (iTWIST) is to foster collaboration between international scientific teams by disseminating ideas through both specific oral/poster presentations and free discussions. For its second edition, the iTWIST workshop took place in the medieval and picturesque town of Namur in Belgium, from Wednesday August 27th till Friday August 29th, 2014. The workshop was conveniently located in "The Arsenal" building within walking distance of both hotels and town center. iTWIST'14 has gathered about 70 international participants and has featured 9 invited talks, 10 oral presentations, and 14 posters on the following themes, all related to the theory, application and generalization of the "sparsity paradigm": Sparsity-driven data sensing and processing; Union of low dimensional subspaces; Beyond linear and convex inverse problem; Matrix/manifold/graph sensing/processing; Blind inverse problems and dictionary learning; Sparsity and computational neuroscience; Information theory, geometry and randomness; Complexity/accuracy tradeoffs in numerical methods; Sparsity? What's next?; Sparse machine learning and inference.Comment: 69 pages, 24 extended abstracts, iTWIST'14 website: http://sites.google.com/site/itwist1

Sparse Coding Based Feature Representation Method for Remote Sensing Images

In this dissertation, we study sparse coding based feature representation method for the classification of multispectral and hyperspectral images (HSI). The existing feature representation systems based on the sparse signal model are computationally expensive, requiring to solve a convex optimization problem to learn a dictionary. A sparse coding feature representation framework for the classification of HSI is presented that alleviates the complexity of sparse coding through sub-band construction, dictionary learning, and encoding steps. In the framework, we construct the dictionary based upon the extracted sub-bands from the spectral representation of a pixel. In the encoding step, we utilize a soft threshold function to obtain sparse feature representations for HSI. Experimental results showed that a randomly selected dictionary could be as effective as a dictionary learned from optimization. The new representation usually has a very high dimensionality requiring a lot of computational resources. In addition, the spatial information of the HSI data has not been included in the representation. Thus, we modify the framework by incorporating the spatial information of the HSI pixels and reducing the dimension of the new sparse representations. The enhanced model, called sparse coding based dense feature representation (SC-DFR), is integrated with a linear support vector machine (SVM) and a composite kernels SVM (CKSVM) classifiers to discriminate different types of land cover. We evaluated the proposed algorithm on three well known HSI datasets and compared our method to four recently developed classification methods: SVM, CKSVM, simultaneous orthogonal matching pursuit (SOMP) and image fusion and recursive filtering (IFRF). The results from the experiments showed that the proposed method can achieve better overall and average classification accuracies with a much more compact representation leading to more efficient sparse models for HSI classification. To further verify the power of the new feature representation method, we applied it to a pan-sharpened image to detect seafloor scars in shallow waters. Propeller scars are formed when boat propellers strike and break apart seagrass beds, resulting in habitat loss. We developed a robust identification system by incorporating morphological filters to detect and map the scars. Our results showed that the proposed method can be implemented on a regular basis to monitor changes in habitat characteristics of coastal waters

The IPAC Image Subtraction and Discovery Pipeline for the intermediate Palomar Transient Factory

We describe the near real-time transient-source discovery engine for the intermediate Palomar Transient Factory (iPTF), currently in operations at the Infrared Processing and Analysis Center (IPAC), Caltech. We coin this system the IPAC/iPTF Discovery Engine (or IDE). We review the algorithms used for PSF-matching, image subtraction, detection, photometry, and machine-learned (ML) vetting of extracted transient candidates. We also review the performance of our ML classifier. For a limiting signal-to-noise ratio of 4 in relatively unconfused regions, "bogus" candidates from processing artifacts and imperfect image subtractions outnumber real transients by ~ 10:1. This can be considerably higher for image data with inaccurate astrometric and/or PSF-matching solutions. Despite this occasionally high contamination rate, the ML classifier is able to identify real transients with an efficiency (or completeness) of ~ 97% for a maximum tolerable false-positive rate of 1% when classifying raw candidates. All subtraction-image metrics, source features, ML probability-based real-bogus scores, contextual metadata from other surveys, and possible associations with known Solar System objects are stored in a relational database for retrieval by the various science working groups. We review our efforts in mitigating false-positives and our experience in optimizing the overall system in response to the multitude of science projects underway with iPTF.Comment: 66 pages, 21 figures, 7 tables, accepted by PAS

Reduced hyperBF networks : practical optimization, regularization, and applications in bioinformatics.

A hyper basis function network (HyperBF) is a generalized radial basis function network (RBF) where the activation function is a radial function of a weighted distance. The local weighting of the distance accounts for the variation in local scaling and discriminative power along each feature. Such generalization makes HyperBF networks capable of interpolating decision functions with high accuracy. However, such complexity makes HyperBF networks susceptible to overfitting. Moreover, training a HyperBF network demands weights, centers and local scaling factors to be optimized simultaneously. In the case of a relatively large dataset with a large network structure, such optimization becomes computationally challenging. In this work, a new regularization method that performs soft local dimension reduction and weight decay is presented. The regularized HyperBF (Reduced HyperBF) network is shown to provide classification accuracy comparable to a Support Vector Machines (SVM) while requiring a significantly smaller network structure. Furthermore, the soft local dimension reduction is shown to be informative for ranking features based on their localized discriminative power. In addition, a practical training approach for constructing HyperBF networks is presented. This approach uses hierarchal clustering to initialize neurons followed by a gradient optimization using a scaled Rprop algorithm with a localized partial backtracking step (iSRprop). Experimental results on a number of datasets show a faster and smoother convergence than the regular Rprop algorithm. The proposed Reduced HyperBF network is applied to two problems in bioinformatics. The first is the detection of transcription start sites (TSS) in human DNA. A novel method for improving the accuracy of TSS recognition for recently published methods is proposed. This method incorporates a new metric feature based on oligonucleotide positional frequencies. The second application is the accurate classification of microarray samples. A new feature selection algorithm based on a Reduced HyperBF network is proposed. The method is applied to two microarray datasets and is shown to select a minimal subset of features with high discriminative information. The algorithm is compared to two widely used methods and is shown to provide competitive results. In both applications, the final Reduced HyperBF network is used for higher level analysis. Significant neurons can indicate subpopulations, while local active features provide insight into the characteristics of the subpopulation in specific and the whole class in general

Joint optimization of manifold learning and sparse representations for face and gesture analysis

Face and gesture understanding algorithms are powerful enablers in intelligent vision systems for surveillance, security, entertainment, and smart spaces. In the future, complex networks of sensors and cameras may disperse directions to lost tourists, perform directory lookups in the office lobby, or contact the proper authorities in case of an emergency. To be effective, these systems will need to embrace human subtleties while interacting with people in their natural conditions. Computer vision and machine learning techniques have recently become adept at solving face and gesture tasks using posed datasets in controlled conditions. However, spontaneous human behavior under unconstrained conditions, or in the wild, is more complex and is subject to considerable variability from one person to the next. Uncontrolled conditions such as lighting, resolution, noise, occlusions, pose, and temporal variations complicate the matter further. This thesis advances the field of face and gesture analysis by introducing a new machine learning framework based upon dimensionality reduction and sparse representations that is shown to be robust in posed as well as natural conditions. Dimensionality reduction methods take complex objects, such as facial images, and attempt to learn lower dimensional representations embedded in the higher dimensional data. These alternate feature spaces are computationally more efficient and often more discriminative. The performance of various dimensionality reduction methods on geometric and appearance based facial attributes are studied leading to robust facial pose and expression recognition models. The parsimonious nature of sparse representations (SR) has successfully been exploited for the development of highly accurate classifiers for various applications. Despite the successes of SR techniques, large dictionaries and high dimensional data can make these classifiers computationally demanding. Further, sparse classifiers are subject to the adverse effects of a phenomenon known as coefficient contamination, where for example variations in pose may affect identity and expression recognition. This thesis analyzes the interaction between dimensionality reduction and sparse representations to present a unified sparse representation classification framework that addresses both issues of computational complexity and coefficient contamination. Semi-supervised dimensionality reduction is shown to mitigate the coefficient contamination problems associated with SR classifiers. The combination of semi-supervised dimensionality reduction with SR systems forms the cornerstone for a new face and gesture framework called Manifold based Sparse Representations (MSR). MSR is shown to deliver state-of-the-art facial understanding capabilities. To demonstrate the applicability of MSR to new domains, MSR is expanded to include temporal dynamics. The joint optimization of dimensionality reduction and SRs for classification purposes is a relatively new field. The combination of both concepts into a single objective function produce a relation that is neither convex, nor directly solvable. This thesis studies this problem to introduce a new jointly optimized framework. This framework, termed LGE-KSVD, utilizes variants of Linear extension of Graph Embedding (LGE) along with modified K-SVD dictionary learning to jointly learn the dimensionality reduction matrix, sparse representation dictionary, sparse coefficients, and sparsity-based classifier. By injecting LGE concepts directly into the K-SVD learning procedure, this research removes the support constraints K-SVD imparts on dictionary element discovery. Results are shown for facial recognition, facial expression recognition, human activity analysis, and with the addition of a concept called active difference signatures, delivers robust gesture recognition from Kinect or similar depth cameras