Brain Tumor Vascular Network Segmentation from Micro-Tomography

Micro-tomography produces high resolution images of bio- logical structures such as vascular networks. In this paper, we present a new approach for segmenting vascular network into pathological and normal regions from considering their micro-vessel 3D structure only. We define and use a condi- tional random field for segmenting the output of a watershed algorithm. The tumoral and normal classes are thus character- ized by their respective distribution of watershed region size interpreted as local vascular territories

Automatic Segmentation of Fluorescence Lifetime Microscopy Images of Cells Using Multi-Resolution Community Detection

We have developed an automatic method for segmenting fluorescence lifetime (FLT) imaging microscopy (FLIM) images of cells inspired by a multi-resolution community detection (MCD) based network segmentation method. The image processing problem is framed as identifying segments with respective average FLTs against a background in FLIM images. The proposed method segments a FLIM image for a given resolution of the network composed using image pixels as the nodes and similarity between the pixels as the edges. In the resulting segmentation, low network resolution leads to larger segments and high network resolution leads to smaller segments. Further, the mean-square error (MSE) in estimating the FLT segments in a FLIM image using the proposed method was found to be consistently decreasing with increasing resolution of the corresponding network. The proposed MCD method outperformed a popular spectral clustering based method in performing FLIM image segmentation. The spectral segmentation method introduced noisy segments in its output at high resolution. It was unable to offer a consistent decrease in MSE with increasing resolution.Comment: 21 pages, 6 figure

Holistic, Instance-Level Human Parsing

Object parsing -- the task of decomposing an object into its semantic parts -- has traditionally been formulated as a category-level segmentation problem. Consequently, when there are multiple objects in an image, current methods cannot count the number of objects in the scene, nor can they determine which part belongs to which object. We address this problem by segmenting the parts of objects at an instance-level, such that each pixel in the image is assigned a part label, as well as the identity of the object it belongs to. Moreover, we show how this approach benefits us in obtaining segmentations at coarser granularities as well. Our proposed network is trained end-to-end given detections, and begins with a category-level segmentation module. Thereafter, a differentiable Conditional Random Field, defined over a variable number of instances for every input image, reasons about the identity of each part by associating it with a human detection. In contrast to other approaches, our method can handle the varying number of people in each image and our holistic network produces state-of-the-art results in instance-level part and human segmentation, together with competitive results in category-level part segmentation, all achieved by a single forward-pass through our neural network.Comment: Poster at BMVC 201