Segmentation of magnetic resonance images

The aim of the study was based on magnetic resonance images to create a program for detection of gray and white matter by using different segmentation algorithms. First, using a selection of basic techniques, then application of advanced methods. After trying these methods, the paper deals with the most advanced method, which include the level set method.Segmentation, magnetic resonance, grey matter, white matter, thresholding, region growing, splitting and merging, watershed, level set method.

Intercomparison of medical image segmentation algorithms

Magnetic Resonance Imaging (MRI) is one of the most widely-used high quality imaging techniques, especially for brain imaging, compared to other techniques such as computed tomography and x-rays, mainly because it possesses better soft tissue contrast resolution. There are several stages involved in analyzing an MRI image, segmentation being one of the most important. Image segmentation is essentially the process of identifying and classifying the constituent parts of an image, and is usually very complex. Unfortunately, it suffers from artefacts including noise, partial volume effects and intensity inhomogeneities. Brain, being a very complicated structure, its precise segmentation is particularly necessary to delineate the borders of anatomically distinct regions and possible tumors. Many algorithms have been proposed for image segmentation, the most important being thresholding, region growing, and clustering methods such as k-means and fuzzy c-means algorithms. The main objective of this project was to investigate a representative number of different algorithms and compare their performance. Image segmentation algorithms, including thresholding, region growing, morphological operations and fuzzy c-means were applied to a selection of simulated and real brain MRI images, and the results compared. The project was realized by developing algorithms using the popular Matlab® software package. Qualitative comparisons were performed on real and simulated brain images, while quantitative comparisons were performed on simulated brain images, using a variety of different parameters, and results tabulated. It was found that the fuzzy c-means algorithm performed better than all the other algorithms, both qualitatively and quantitatively. After comparing the performance of all algorithms, it was concluded that, by combining one or two basic algorithms, a more effective algorithm could be developed for image segmentation that is more robust to noise, considers both intensity and spatial characteristics of an image, and which is computationally efficient.Magnetic Resonance Imaging (MRI) is one of the most widely-used high quality imaging techniques, especially for brain imaging, compared to other techniques such as computed tomography and x-rays, mainly because it possesses better soft tissue contrast resolution. There are several stages involved in analyzing an MRI image, segmentation being one of the most important. Image segmentation is essentially the process of identifying and classifying the constituent parts of an image, and is usually very complex. Unfortunately, it suffers from artefacts including noise, partial volume effects and intensity inhomogeneities. Brain, being a very complicated structure, its precise segmentation is particularly necessary to delineate the borders of anatomically distinct regions and possible tumors. Many algorithms have been proposed for image segmentation, the most important being thresholding, region growing, and clustering methods such as k-means and fuzzy c-means algorithms. The main objective of this project was to investigate a representative number of different algorithms and compare their performance. Image segmentation algorithms, including thresholding, region growing, morphological operations and fuzzy c-means were applied to a selection of simulated and real brain MRI images, and the results compared. The project was realized by developing algorithms using the popular Matlab® software package. Qualitative comparisons were performed on real and simulated brain images, while quantitative comparisons were performed on simulated brain images, using a variety of different parameters, and results tabulated. It was found that the fuzzy c-means algorithm performed better than all the other algorithms, both qualitatively and quantitatively. After comparing the performance of all algorithms, it was concluded that, by combining one or two basic algorithms, a more effective algorithm could be developed for image segmentation that is more robust to noise, considers both intensity and spatial characteristics of an image, and which is computationally efficient

Gray Image extraction using Fuzzy Logic

Fuzzy systems concern fundamental methodology to represent and process uncertainty and imprecision in the linguistic information. The fuzzy systems that use fuzzy rules to represent the domain knowledge of the problem are known as Fuzzy Rule Base Systems (FRBS). On the other hand image segmentation and subsequent extraction from a noise-affected background, with the help of various soft computing methods, are relatively new and quite popular due to various reasons. These methods include various Artificial Neural Network (ANN) models (primarily supervised in nature), Genetic Algorithm (GA) based techniques, intensity histogram based methods etc. providing an extraction solution working in unsupervised mode happens to be even more interesting problem. Literature suggests that effort in this respect appears to be quite rudimentary. In the present article, we propose a fuzzy rule guided novel technique that is functional devoid of any external intervention during execution. Experimental results suggest that this approach is an efficient one in comparison to different other techniques extensively addressed in literature. In order to justify the supremacy of performance of our proposed technique in respect of its competitors, we take recourse to effective metrics like Mean Squared Error (MSE), Mean Absolute Error (MAE), Peak Signal to Noise Ratio (PSNR).Comment: 8 pages, 5 figures, Fuzzy Rule Base, Image Extraction, Fuzzy Inference System (FIS), Membership Functions, Membership values,Image coding and Processing, Soft Computing, Computer Vision Accepted and published in IEEE. arXiv admin note: text overlap with arXiv:1206.363

Image segmentation with adaptive region growing based on a polynomial surface model

A new method for segmenting intensity images into smooth surface segments is presented. The main idea is to divide the image into flat, planar, convex, concave, and saddle patches that coincide as well as possible with meaningful object features in the image. Therefore, we propose an adaptive region growing algorithm based on low-degree polynomial fitting. The algorithm uses a new adaptive thresholding technique with the L∞ fitting cost as a segmentation criterion. The polynomial degree and the fitting error are automatically adapted during the region growing process. The main contribution is that the algorithm detects outliers and edges, distinguishes between strong and smooth intensity transitions and finds surface segments that are bent in a certain way. As a result, the surface segments corresponding to meaningful object features and the contours separating the surface segments coincide with real-image object edges. Moreover, the curvature-based surface shape information facilitates many tasks in image analysis, such as object recognition performed on the polynomial representation. The polynomial representation provides good image approximation while preserving all the necessary details of the objects in the reconstructed images. The method outperforms existing techniques when segmenting images of objects with diffuse reflecting surfaces

MRI image segmantation based on edge detection

Cílem této práce je představit základní segmentační techniky používáné v oblasti medicínského zpracování obrazových dat a pomocí 3D prohlížeče schopného zobrazit 3D obrazy implementovat segmentační modul založený na hranové detekci a vyhodnotit výsledky. Navrhovaný prohlížeč je sestavený v prostředi Matlab GUI a je schopen načíst objem 3D snímků představující lidskou hlavu. Navrhovaný segmentační modul je založen na použití hranových detektorů, zejména Cannyho detektoru.The aim of this thesis is to present the basic segmentation techniques uses in the field of medical image processing and by using a 3D viewer able to visualize 3D images, implement a segmentation module based on edges detection and evaluate the results. The proposed viewer is a 3D viewer build using matlab GUI and is able to load a volume of images representing the human head. The proposed segmentation module is based on the use of edge detectors particularly the Canny algorithm.