6,601 research outputs found
Online Unsupervised Multi-view Feature Selection
In the era of big data, it is becoming common to have data with multiple
modalities or coming from multiple sources, known as "multi-view data".
Multi-view data are usually unlabeled and come from high-dimensional spaces
(such as language vocabularies), unsupervised multi-view feature selection is
crucial to many applications. However, it is nontrivial due to the following
challenges. First, there are too many instances or the feature dimensionality
is too large. Thus, the data may not fit in memory. How to select useful
features with limited memory space? Second, how to select features from
streaming data and handles the concept drift? Third, how to leverage the
consistent and complementary information from different views to improve the
feature selection in the situation when the data are too big or come in as
streams? To the best of our knowledge, none of the previous works can solve all
the challenges simultaneously. In this paper, we propose an Online unsupervised
Multi-View Feature Selection, OMVFS, which deals with large-scale/streaming
multi-view data in an online fashion. OMVFS embeds unsupervised feature
selection into a clustering algorithm via NMF with sparse learning. It further
incorporates the graph regularization to preserve the local structure
information and help select discriminative features. Instead of storing all the
historical data, OMVFS processes the multi-view data chunk by chunk and
aggregates all the necessary information into several small matrices. By using
the buffering technique, the proposed OMVFS can reduce the computational and
storage cost while taking advantage of the structure information. Furthermore,
OMVFS can capture the concept drifts in the data streams. Extensive experiments
on four real-world datasets show the effectiveness and efficiency of the
proposed OMVFS method. More importantly, OMVFS is about 100 times faster than
the off-line methods
Knowledge-based gene expression classification via matrix factorization
Motivation: Modern machine learning methods based on matrix decomposition techniques, like independent component analysis (ICA) or non-negative matrix factorization (NMF), provide new and efficient analysis tools which are currently explored to analyze gene expression profiles. These exploratory feature extraction techniques yield expression modes (ICA) or metagenes (NMF). These extracted features are considered indicative of underlying regulatory processes. They can as well be applied to the classification of gene expression datasets by grouping samples into different categories for diagnostic purposes or group genes into functional categories for further investigation of related metabolic pathways and regulatory networks.
Results: In this study we focus on unsupervised matrix factorization techniques and apply ICA and sparse NMF to microarray datasets. The latter monitor the gene expression levels of human peripheral blood cells during differentiation from monocytes to macrophages. We show that these tools are able to identify relevant signatures in the deduced component matrices and extract informative sets of marker genes from these gene expression profiles. The methods rely on the joint discriminative power of a set of marker genes rather than on single marker genes. With these sets of marker genes, corroborated by leave-one-out or random forest cross-validation, the datasets could easily be classified into related diagnostic categories. The latter correspond to either monocytes versus macrophages or healthy vs Niemann Pick C disease patients.Siemens AG, MunichDFG (Graduate College 638)DAAD (PPP Luso - Alem˜a and PPP Hispano - Alemanas
Attributed Network Embedding for Learning in a Dynamic Environment
Network embedding leverages the node proximity manifested to learn a
low-dimensional node vector representation for each node in the network. The
learned embeddings could advance various learning tasks such as node
classification, network clustering, and link prediction. Most, if not all, of
the existing works, are overwhelmingly performed in the context of plain and
static networks. Nonetheless, in reality, network structure often evolves over
time with addition/deletion of links and nodes. Also, a vast majority of
real-world networks are associated with a rich set of node attributes, and
their attribute values are also naturally changing, with the emerging of new
content patterns and the fading of old content patterns. These changing
characteristics motivate us to seek an effective embedding representation to
capture network and attribute evolving patterns, which is of fundamental
importance for learning in a dynamic environment. To our best knowledge, we are
the first to tackle this problem with the following two challenges: (1) the
inherently correlated network and node attributes could be noisy and
incomplete, it necessitates a robust consensus representation to capture their
individual properties and correlations; (2) the embedding learning needs to be
performed in an online fashion to adapt to the changes accordingly. In this
paper, we tackle this problem by proposing a novel dynamic attributed network
embedding framework - DANE. In particular, DANE first provides an offline
method for a consensus embedding and then leverages matrix perturbation theory
to maintain the freshness of the end embedding results in an online manner. We
perform extensive experiments on both synthetic and real attributed networks to
corroborate the effectiveness and efficiency of the proposed framework.Comment: 10 page
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