Autonomic State Management for Optimistic Simulation Platforms

We present the design and implementation of an autonomic state manager (ASM) tailored for integration within optimistic parallel discrete event simulation (PDES) environments based on the C programming language and the executable and linkable format (ELF), and developed for execution on x8664 architectures. With ASM, the state of any logical process (LP), namely the individual (concurrent) simulation unit being part of the simulation model, is allowed to be scattered on dynamically allocated memory chunks managed via standard API (e.g., malloc/free). Also, the application programmer is not required to provide any serialization/deserialization module in order to take a checkpoint of the LP state, or to restore it in case a causality error occurs during the optimistic run, or to provide indications on which portions of the state are updated by event processing, so to allow incremental checkpointing. All these tasks are handled by ASM in a fully transparent manner via (A) runtime identification (with chunk-level granularity) of the memory map associated with the LP state, and (B) runtime tracking of the memory updates occurring within chunks belonging to the dynamic memory map. The co-existence of the incremental and non-incremental log/restore modes is achieved via dual versions of the same application code, transparently generated by ASM via compile/link time facilities. Also, the dynamic selection of the best suited log/restore mode is actuated by ASM on the basis of an innovative modeling/optimization approach which takes into account stability of each operating mode with respect to variations of the model/environmental execution parameters

A fine-grain time-sharing Time Warp system

Although Parallel Discrete Event Simulation (PDES) platforms relying on the Time Warp (optimistic) synchronization protocol already allow for exploiting parallelism, several techniques have been proposed to further favor performance. Among them we can mention optimized approaches for state restore, as well as techniques for load balancing or (dynamically) controlling the speculation degree, the latter being specifically targeted at reducing the incidence of causality errors leading to waste of computation. However, in state of the art Time Warp systems, events’ processing is not preemptable, which may prevent the possibility to promptly react to the injection of higher priority (say lower timestamp) events. Delaying the processing of these events may, in turn, give rise to higher incidence of incorrect speculation. In this article we present the design and realization of a fine-grain time-sharing Time Warp system, to be run on multi-core Linux machines, which makes systematic use of event preemption in order to dynamically reassign the CPU to higher priority events/tasks. Our proposal is based on a truly dual mode execution, application vs platform, which includes a timer-interrupt based support for bringing control back to platform mode for possible CPU reassignment according to very fine grain periods. The latter facility is offered by an ad-hoc timer-interrupt management module for Linux, which we release, together with the overall time-sharing support, within the open source ROOT-Sim platform. An experimental assessment based on the classical PHOLD benchmark and two real world models is presented, which shows how our proposal effectively leads to the reduction of the incidence of causality errors, as compared to traditional Time Warp, especially when running with higher degrees of parallelism

Reversible Computation: Extending Horizons of Computing

This open access State-of-the-Art Survey presents the main recent scientific outcomes in the area of reversible computation, focusing on those that have emerged during COST Action IC1405 "Reversible Computation - Extending Horizons of Computing", a European research network that operated from May 2015 to April 2019. Reversible computation is a new paradigm that extends the traditional forwards-only mode of computation with the ability to execute in reverse, so that computation can run backwards as easily and naturally as forwards. It aims to deliver novel computing devices and software, and to enhance existing systems by equipping them with reversibility. There are many potential applications of reversible computation, including languages and software tools for reliable and recovery-oriented distributed systems and revolutionary reversible logic gates and circuits, but they can only be realized and have lasting effect if conceptual and firm theoretical foundations are established first

Structure-Property Relationships in Novel Electrospun Composites for Advanced Applications

Active polymeric materials that alter shape in response to an external stimulus offer unique avenues for the design and study of dynamic structures. This research focused on developing elastomeric polymer composites with multiple functionalities by exploring the design and properties for various applications including controlled drug delivery and shape memory. The first part of this dissertation describes the fabrication and characterization of a soft, elastomeric polymeric composite with inherent shape memory properties capable of localized, long-term tunable drug release. In Chapter 2, the fibers were loaded with a hydrophilic drug model, Rhodamine B, and embedded within a siloxane-based elastomeric matrix to form a composite, which is critical to regulating water transport from the environment to the fibers to liberate the drug. In vitro drug release studies were conducted in PBS under physiological conditions to evaluate the effect of drug concentration, fiber size, fiber crystallinity, drug loading and the addition of the crosslinked siloxane. The effect of the microstructural properties of the fibrous phase on drug release were explored and tuned through thermal treatment of the composite. The findings from Chapter 2 were then applied to Chapter 3 for the development of a vascular graft with controlled and sustained nitric oxide (NO) releasing capabilities and suitable mechanical properties for the prevention of restenosis. To avoid the unwanted systemic side effects associated with a free radical such as NO, our approach delivered NO locally by supplying it from the vascular graft material. It was found that reducing the tin catalyst used for crosslinking the silicone constituent significantly improved cell viability, however, the NO interacted with the catalyst activity, affecting the silicone crosslinking reaction. The NO-releasing composite was demonstrated to be a strong chemottractant to endothelial cells. The next part of this research focused on the development of a shape memory elastomeric composite featuring thermoplastic fibers imbibed by polyanhydride-based elastomer. It was determined in Chapter 4 that the polyanhydride elastomer is capable of dynamic covalent exchange reactions at elevated temperatures among the network chains that allowed near-complete reconfiguration of the permanent shape in the solid state. Together, these features were combined to create a shape memory elastomer capable of arbitrary programming of both temporary and permanent shapes. The degradation properties of this composite were then studied in Chapter 5 under in vitro conditions, where it was revealed that the degradation rate of the PAH matrix was strongly influenced by the selection of the composition of polymeric fibrous phase. The degradation of this composite was found to occur as a modified surface to bulk degradation, although the PAH by itself erodes heterogeneously. A hydrophilic model drug was incorporated in the fibrous phases and used to study the in vitro controlled release properties of these composites, where drug release correlated with the matrix degradation. The shape memory properties of these polyanhdride-based compositions were also examined. Lastly, Chapter 6 investigated the design, fabrication, and characterization of a polymeric composite composed of oriented semicrystalline polymeric fibers embedded within a crosslinked epoxy matrix. This anisotropy enabled the construction of complex three dimensional geometries featuring latent mechanical programming. Rather than relying on specific molds to manipulate a new shape, this system capitalized on strain conditioning to influence a new structure. Additionally, we found that by compressing the oriented fibers of each ply during composite cure, the composites constructed from such plies exhibited actuation. The shape memory composites studied in this dissertation demonstrated the potential be broadly applicable from drug releasing implants, tailorable degradability, and the self-assembly of complex shapes. Chapter 7 provides some recommendations for future directions

Reversible Computation: Extending Horizons of Computing

This open access State-of-the-Art Survey presents the main recent scientific outcomes in the area of reversible computation, focusing on those that have emerged during COST Action IC1405 "Reversible Computation - Extending Horizons of Computing", a European research network that operated from May 2015 to April 2019. Reversible computation is a new paradigm that extends the traditional forwards-only mode of computation with the ability to execute in reverse, so that computation can run backwards as easily and naturally as forwards. It aims to deliver novel computing devices and software, and to enhance existing systems by equipping them with reversibility. There are many potential applications of reversible computation, including languages and software tools for reliable and recovery-oriented distributed systems and revolutionary reversible logic gates and circuits, but they can only be realized and have lasting effect if conceptual and firm theoretical foundations are established first

Dagstuhl News January - December 2011

"Dagstuhl News" is a publication edited especially for the members of the Foundation "Informatikzentrum Schloss Dagstuhl" to thank them for their support. The News give a summary of the scientific work being done in Dagstuhl. Each Dagstuhl Seminar is presented by a small abstract describing the contents and scientific highlights of the seminar as well as the perspectives or challenges of the research topic

A new approach to reversible computing with applications to speculative parallel simulation

In this thesis, we propose an innovative approach to reversible computing that shifts the focus from the operations to the memory outcome of a generic program. This choice allows us to overcome some typical challenges of "plain" reversible computing. Our methodology is to instrument a generic application with the help of an instrumentation tool, namely Hijacker, which we have redesigned and developed for the purpose. Through compile-time instrumentation, we enhance the program's code to keep track of the memory trace it produces until the end. Regardless of the complexity behind the generation of each computational step of the program, we can build inverse machine instructions just by inspecting the instruction that is attempting to write some value to memory. Therefore from this information, we craft an ad-hoc instruction that conveys this old value and the knowledge of where to replace it. This instruction will become part of a more comprehensive structure, namely the reverse window. Through this structure, we have sufficient information to cancel all the updates done by the generic program during its execution. In this writing, we will discuss the structure of the reverse window, as the building block for the whole reversing framework we designed and finally realized. Albeit we settle our solution in the specific context of the parallel discrete event simulation (PDES) adopting the Time Warp synchronization protocol, this framework paves the way for further general-purpose development and employment. We also present two additional innovative contributions coming from our innovative reversibility approach, both of them still embrace traditional state saving-based rollback strategy. The first contribution aims to harness the advantages of both the possible approaches. We implement the rollback operation combining state saving together with our reversible support through a mathematical model. This model enables the system to choose in autonomicity the best rollback strategy, by the mutable runtime dynamics of programs. The second contribution explores an orthogonal direction, still related to reversible computing aspects. In particular, we will address the problem of reversing shared libraries. Indeed, leading from their nature, shared objects are visible to the whole system and so does every possible external modification of their code. As a consequence, it is not possible to instrument them without affecting other unaware applications. We propose a different method to deal with the instrumentation of shared objects. All our innovative proposals have been assessed using the last generation of the open source ROOT-Sim PDES platform, where we integrated our solutions. ROOT-Sim is a C-based package implementing a general purpose simulation environment based on the Time Warp synchronization protocol

Time-Sharing Time Warp via Lightweight Operating System Support

The order according to which the different tasks are carried out within a Time Warp platform has a direct impact on performance, given that event processing is speculative, thus being subject to the possibility of being rolled-back. It is typically recognized that not-yet-executed events having lower timestamps should be given higher CPU-schedule priority, since this contributes to keep low the amount of rollbacks. However, common Time Warp platforms usually execute events as atomic actions. Hence control is bounced back to the underlying simulation platform only at the end of the current event processing routine. In other words, CPU-scheduling of events resembles classical batch-multitasking scheduling, which is recognized not to promptly react to variations of the priority of pending tasks (e.g. associated with the injection of new events in the system). In this article we present the design and implementation of a time-sharing Time Warp platform, to be run on multi-core machines, where the platform-level software is allowed to take back control on a periodical basis (with fine grain period), and to possibly preempt any ongoing event processing activity in favor of dispatching (along the same thread) any other event that is revealed to have higher priority. Our proposal is based on an ad-hoc kernel module for Linux, which implements a fine grain timer-interrupt mechanism with lightweight management, which is fully integrated with the modern top/bottom-half timer-interrupt Linux architecture, and which does not induce any bias in terms of relative CPU-usage planning across Time Warp vs non-Time Warp threads running on the machine. Our time-sharing architecture has been integrated within the open source ROOT-Sim optimistic simulation package, and we also report some experimental data for an assessment of our proposal