Computations of Delaunay and Higher Order Triangulations, with Applications to Splines

Digital data that consist of discrete points are frequently captured and processed by scientific and engineering applications. Due to the rapid advance of new data gathering technologies, data set sizes are increasing, and the data distributions are becoming more irregular. These trends call for new computational tools that are both efficient enough to handle large data sets and flexible enough to accommodate irregularity. A mathematical foundation that is well-suited for developing such tools is triangulation, which can be defined for discrete point sets with little assumption about their distribution. The potential benefits from using triangulation are not fully exploited. The challenges fundamentally stem from the complexity of the triangulation structure, which generally takes more space to represent than the input points. This complexity makes developing a triangulation program a delicate task, particularly when it is important that the program runs fast and robustly over large data. This thesis addresses these challenges in two parts. The first part concentrates on techniques designed for efficiently and robustly computing Delaunay triangulations of three kinds of practical data: the terrain data from LIDAR sensors commonly found in GIS, the atom coordinate data used for biological applications, and the time varying volume data generated from from scientific simulations. The second part addresses the problem of defining spline spaces over triangulations in two dimensions. It does so by generalizing Delaunay configurations, defined as follows. For a given point set P in two dimensions, a Delaunay configuration is a pair of subsets (T, I) from P, where T, called the boundary set, is a triplet and I, called the interior set, is the set of points that fall in the circumcircle through T. The size of the interior set is the degree of the configuration. As recently discovered by Neamtu (2004), for a chosen point set, the set of all degree k Delaunay configurations can be associated with a set of degree k plus 1 splines that form the basis of a spline space. In particular, for the trivial case of k equals 0, the spline space coincides with the PL interpolation functions over the Delaunay triangulation. Neamtu’s definition of the spline space relies only on a few structural properties of the Delaunay configurations. This raises the question whether there exist other sets of configurations with identical structural properties. If there are, then these sets of configurations—let us call them generalized configurations from hereon—can be substituted for Delaunay configurations in Neamtu’s definition of spline space thereby yielding a family of splines over the same point set

Large bichromatic point sets admit empty monochromatic 4-gons

We consider a variation of a problem stated by Erd˝os and Szekeres in 1935 about the existence of a number fES(k) such that any set S of at least fES(k) points in general position in the plane has a subset of k points that are the vertices of a convex k-gon. In our setting the points of S are colored, and we say that a (not necessarily convex) spanned polygon is monochromatic if all its vertices have the same color. Moreover, a polygon is called empty if it does not contain any points of S in its interior. We show that any bichromatic set of n ≥ 5044 points in R2 in general position determines at least one empty, monochromatic quadrilateral (and thus linearly many).Postprint (published version

Graphical and Topological Analysis of the Cell Nucleus

It is well known that our genetic material influences our tendency to develop certain conditions. Finding the causes behind these predispositions assumes the understanding of mechanisms handling and maintaining the genome. While the problem is important from the biological point of view, being one of the basic riddles of life, it also poses interesting questions which may only be answered by physics. Topics include transport, reaction-diffusion, polymer physics, equilibrium and non-equilibrium dynamics and chaos, amongst others. Experimental techniques, like microscopy or molecular biology approaches provide an ever improving insight in the structure of the nucleus, however, computational and modelling approaches are still needed to explain unknown aspects of genetics. % Evidence is accumulating that our genetic material not only influences our resemblance to relatives and the chances that we may have a tendency to develop certain diseases, but also our predisposition to contract viral infections or to develop conditions like depression, obesity or substance dependence. It has become clear that understanding how the genetic material is organized and how it is being handled might be the key to revolutionize medicine. Experimental techniques, like microscopy or molecular biology approaches provide an ever improving insight in the structure of the nucleus, however, computational and modelling approaches are still needed to explain unknown aspects of genetics. In this thesis we tackle the problem of understanding the structure of the nucleus from the two opposite sides of the experimental ``blind-spot''. We develop alternative image modelling and analysis tools which are able to capture and recreate the ``large scale'' density patterns observed in confocal microscopy images of the nucleus. For this, we introduce a generalized Potts model which is extensively analysed also from the statistical mechanics point of view. Furthermore, we apply statistical mechanics and graph theory calculations to study patterns registered with super resolution microscopy techniques. We investigate the effect of irradiation and light stress on the structure of the chromatin, and are able to quantitatively support prior experimental observations regarding structural changes. Understanding the interaction and classification of proteins, structures which perform vastly different functions on molecular scales, is also important to achieve the final picture. We contribute to this by elaborating a framework to assess topological similarity among these chemicals. Our approach is based on recently developed computational topology algorithms used to calculate fingerprints of the molecules. We discuss three different modifications of the framework and investigate them on real-world datasets. In addition, we recognize that the mentioned fingerprints can be used to calculate the fractal dimension of certain objects, and offer an intuitive explanation for the observed relation

Collection of abstracts of the 24th European Workshop on Computational Geometry

International audienceThe 24th European Workshop on Computational Geomety (EuroCG'08) was held at INRIA Nancy - Grand Est & LORIA on March 18-20, 2008. The present collection of abstracts contains the 63 scientific contributions as well as three invited talks presented at the workshop

Moving Polygon Methods for Incompressible Fluid Dynamics

Hybrid particle-mesh numerical approaches are proposed to solve incompressible fluid flows. The methods discussed in this work consist of a collection of particles each wrapped in their own polygon mesh cell, which then move through the domain as the flow evolves. Variables such as pressure, velocity, mass, and momentum are located either on the mesh or on the particles themselves, depending on the specific algorithm described, and each will be shown to have its own advantages and disadvantages. This work explores what is required to obtain local conservation of mass, momentum, and convergence for the velocity and pressure in a particle-mesh CFD simulation method. Current particle methods are explored and analyzed for their benefits and deficiencies, and newly developed methods are described with results and analysis. A new method for generating locally orthogonal polygonal meshes from a set of generator points is presented in which polygon areas are a constraint. The area constraint property is particularly useful for particle methods where moving polygons track a discrete portion of material. Voronoi polygon meshes have some very attractive mathematical and numerical properties for numerical computation, so a generalization of Voronoi polygon meshes is formulated that enforces a polygon area constraint. Area constrained moving polygonal meshes allow one to develop hybrid particle-mesh numerical methods that display some of the most attractive features of each approach. It is shown that this mesh construction method can continuously reconnect a moving, unstructured polygonal mesh in a pseudo-Lagrangian fashion without change in cell area/volume, and the method\u27s ability to simulate various physical scenarios is shown. The advantages are identified for incompressible fluid flow calculations, with demonstration cases that include material discontinuities of all three phases of matter and large density jumps

LIPIcs, Volume 258, SoCG 2023, Complete Volume

LIPIcs, Volume 258, SoCG 2023, Complete Volum

Design of decorative 3D models: from geodesic ornaments to tangible assemblies

L'obiettivo di questa tesi è sviluppare strumenti utili per creare opere d'arte decorative digitali in 3D. Uno dei processi decorativi più comunemente usati prevede la creazione di pattern decorativi, al fine di abbellire gli oggetti. Questi pattern possono essere dipinti sull'oggetto di base o realizzati con l'applicazione di piccoli elementi decorativi. Tuttavia, la loro realizzazione nei media digitali non è banale. Da un lato, gli utenti esperti possono eseguire manualmente la pittura delle texture o scolpire ogni decorazione, ma questo processo può richiedere ore per produrre un singolo pezzo e deve essere ripetuto da zero per ogni modello da decorare. D'altra parte, gli approcci automatici allo stato dell'arte si basano sull'approssimazione di questi processi con texturing basato su esempi o texturing procedurale, o con sistemi di riproiezione 3D. Tuttavia, questi approcci possono introdurre importanti limiti nei modelli utilizzabili e nella qualità dei risultati. Il nostro lavoro sfrutta invece i recenti progressi e miglioramenti delle prestazioni nel campo dell'elaborazione geometrica per creare modelli decorativi direttamente sulle superfici. Presentiamo una pipeline per i pattern 2D e una per quelli 3D, e dimostriamo come ognuna di esse possa ricreare una vasta gamma di risultati con minime modifiche dei parametri. Inoltre, studiamo la possibilità di creare modelli decorativi tangibili. I pattern 3D generati possono essere stampati in 3D e applicati a oggetti realmente esistenti precedentemente scansionati. Discutiamo anche la creazione di modelli con mattoncini da costruzione, e la possibilità di mescolare mattoncini standard e mattoncini custom stampati in 3D. Ciò consente una rappresentazione precisa indipendentemente da quanto la voxelizzazione sia approssimativa. I principali contributi di questa tesi sono l'implementazione di due diverse pipeline decorative, un approccio euristico alla costruzione con mattoncini e un dataset per testare quest'ultimo.The aim of this thesis is to develop effective tools to create digital decorative 3D artworks. Real-world art often involves the use of decorative patterns to enrich objects. These patterns can be painted on the base or might be realized with the application of small decorative elements. However, their creation in digital media is not trivial. On the one hand, users can manually perform texture paint or sculpt each decoration, in a process that can take hours to produce a single piece and needs to be repeated from the ground up for every model that needs to be decorated. On the other hand, automatic approaches in state of the art rely on approximating these processes with procedural or by-example texturing or with 3D reprojection. However, these approaches can introduce significant limitations in the models that can be used and in the quality of the results. Instead, our work exploits the recent advances and performance improvements in the geometry processing field to create decorative patterns directly on surfaces. We present a pipeline for 2D and one for 3D patterns and demonstrate how each of them can recreate a variety of results with minimal tweaking of the parameters. Furthermore, we investigate the possibility of creating decorative tangible models. The 3D patterns we generate can be 3D printed and applied to previously scanned real-world objects. We also discuss the creation of models with standard building bricks and the possibility of mixing standard and custom 3D-printed bricks. This allows for a precise representation regardless of the coarseness of the voxelization. The main contributions of this thesis are the implementation of two different decorative pipelines, a heuristic approach to brick construction, and a dataset to test the latter

Courbure discrète : théorie et applications

International audienceThe present volume contains the proceedings of the 2013 Meeting on discrete curvature, held at CIRM, Luminy, France. The aim of this meeting was to bring together researchers from various backgrounds, ranging from mathematics to computer science, with a focus on both theory and applications. With 27 invited talks and 8 posters, the conference attracted 70 researchers from all over the world. The challenge of finding a common ground on the topic of discrete curvature was met with success, and these proceedings are a testimony of this wor