2,783 research outputs found
Lenia and Expanded Universe
We report experimental extensions of Lenia, a continuous cellular automata
family capable of producing lifelike self-organizing autonomous patterns. The
rule of Lenia was generalized into higher dimensions, multiple kernels, and
multiple channels. The final architecture approaches what can be seen as a
recurrent convolutional neural network. Using semi-automatic search e.g.
genetic algorithm, we discovered new phenomena like polyhedral symmetries,
individuality, self-replication, emission, growth by ingestion, and saw the
emergence of "virtual eukaryotes" that possess internal division of labor and
type differentiation. We discuss the results in the contexts of biology,
artificial life, and artificial intelligence.Comment: 8 pages, 5 figures, 1 table; submitted to ALIFE 2020 conferenc
Mathematical models of avascular cancer
This review will outline a number of illustrative mathematical models describing the growth of avascular tumours. The aim of the review is to provide a relatively comprehensive list of existing models in this area and discuss several representative models in greater detail. In the latter part of the review, some possible future avenues of mathematical modelling of avascular tumour development are outlined together with a list of key questions
Differential growth of wrinkled biofilms
Biofilms are antibiotic-resistant bacterial aggregates that grow on moist
surfaces and can trigger hospital-acquired infections. They provide a classical
example in biology where the dynamics of cellular communities may be observed
and studied. Gene expression regulates cell division and differentiation, which
affect the biofilm architecture. Mechanical and chemical processes shape the
resulting structure. We gain insight into the interplay between cellular and
mechanical processes during biofilm development on air-agar interfaces by means
of a hybrid model. Cellular behavior is governed by stochastic rules informed
by a cascade of concentration fields for nutrients, waste and autoinducers.
Cellular differentiation and death alter the structure and the mechanical
properties of the biofilm, which is deformed according to Foppl-Von Karman
equations informed by cellular processes and the interaction with the
substratum. Stiffness gradients due to growth and swelling produce wrinkle
branching. We are able to reproduce wrinkled structures often formed by
biofilms on air-agar interfaces, as well as spatial distributions of
differentiated cells commonly observed with B. subtilis.Comment: 19 pages, 13 figure
Astrobiological Complexity with Probabilistic Cellular Automata
Search for extraterrestrial life and intelligence constitutes one of the
major endeavors in science, but has yet been quantitatively modeled only rarely
and in a cursory and superficial fashion. We argue that probabilistic cellular
automata (PCA) represent the best quantitative framework for modeling
astrobiological history of the Milky Way and its Galactic Habitable Zone. The
relevant astrobiological parameters are to be modeled as the elements of the
input probability matrix for the PCA kernel. With the underlying simplicity of
the cellular automata constructs, this approach enables a quick analysis of
large and ambiguous input parameters' space. We perform a simple clustering
analysis of typical astrobiological histories and discuss the relevant boundary
conditions of practical importance for planning and guiding actual empirical
astrobiological and SETI projects. In addition to showing how the present
framework is adaptable to more complex situations and updated observational
databases from current and near-future space missions, we demonstrate how
numerical results could offer a cautious rationale for continuation of
practical SETI searches.Comment: 37 pages, 11 figures, 2 tables; added journal reference belo
Non-Direct Encoding Method Based on Cellular Automata to Design Neural Network Architectures
Architecture design is a fundamental step in the successful application of Feed forward Neural Networks. In most cases a large number of neural networks architectures suitable to solve a problem exist and the architecture design is, unfortunately, still a human expert’s job. It depends heavily on the expert and on a tedious trial-and-error process. In the last years, many works have been focused on automatic resolution of the design of neural network architectures. Most of the methods are based on evolutionary computation paradigms. Some of the designed methods are based on direct representations of the parameters of the network. These representations do not allow scalability; thus, for representing large architectures very large structures are required. More interesting alternatives are represented by indirect schemes. They codify a compact representation of the neural network. In this work, an indirect constructive encoding scheme is proposed. This scheme is based on cellular automata representations and is inspired by the idea that only a few seeds for the initial configuration of a cellular automaton can produce a wide variety of feed forward neural networks architectures. The cellular approach is experimentally validated in different domains and compared with a direct codification scheme.Publicad
Mathematical models of avascular cancer
This review will outline a number of illustrative mathematical models describing the growth of avascular tumours. The aim of the review is to provide a relatively comprehensive list of existing models in this area and discuss several representative models in greater detail. In the latter part of the review, some possible future avenues of mathematical modelling of avascular tumour development are outlined together with a list of key questions
Cellular Automaton for Realistic Modelling of Landslides
A numerical model is developed for the simulation of debris flow in
landslides over a complex three dimensional topography. The model is based on a
lattice, in which debris can be transferred among nearest neighbors according
to established empirical relationships for granular flows. The model is then
validated by comparing a simulation with reported field data. Our model is in
fact a realistic elaboration of simpler ``sandpile automata'', which have in
recent years been studied as supposedly paradigmatic of ``self-organized
criticality''.
Statistics and scaling properties of the simulation are examined, and show
that the model has an intermittent behavior.Comment: Revised version (gramatical and writing style cleanup mainly).
Accepted for publication by Nonlinear Processes in Geophysics. 16 pages, 98Kb
uuencoded compressed dvi file (that's the way life is easiest). Big (6Mb)
postscript figures available upon request from [email protected] /
[email protected]
Validation and Calibration of Models for Reaction-Diffusion Systems
Space and time scales are not independent in diffusion. In fact, numerical
simulations show that different patterns are obtained when space and time steps
( and ) are varied independently. On the other hand,
anisotropy effects due to the symmetries of the discretization lattice prevent
the quantitative calibration of models. We introduce a new class of explicit
difference methods for numerical integration of diffusion and
reaction-diffusion equations, where the dependence on space and time scales
occurs naturally. Numerical solutions approach the exact solution of the
continuous diffusion equation for finite and , if the
parameter assumes a fixed constant value,
where is an odd positive integer parametrizing the alghorithm. The error
between the solutions of the discrete and the continuous equations goes to zero
as and the values of are dimension
independent. With these new integration methods, anisotropy effects resulting
from the finite differences are minimized, defining a standard for validation
and calibration of numerical solutions of diffusion and reaction-diffusion
equations. Comparison between numerical and analytical solutions of
reaction-diffusion equations give global discretization errors of the order of
in the sup norm. Circular patterns of travelling waves have a maximum
relative random deviation from the spherical symmetry of the order of 0.2%, and
the standard deviation of the fluctuations around the mean circular wave front
is of the order of .Comment: 33 pages, 8 figures, to appear in Int. J. Bifurcation and Chao
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