Thermal contouring of forestry data: Wallops Island

The contouring of 8-13.5 micrometer thermal data collected over a forestry site in Virginia is described. The data were collected at an altitude of 1000 ft above terrain on November 4, 1970. The site was covered on three approximately parallel lines. The purpose of the contouring was to attempt to delineate pine trees attacked by southern pine bark beetle, and to map other important terrain categories. Special processing steps were required to achieve the correct aspect ratio of the thermal data. The reference for the correction procedure was color infrared photography. Data form and quality are given, processing steps are outlined, a brief interpretation of results is given, and conclusion are presented

An automated workflow for parallel processing of large multiview SPIM recordings

Multiview light sheet fluorescence microscopy (LSFM) allows to image developing organisms in 3D at unprecedented temporal resolution over long periods of time. The resulting massive amounts of raw image data requires extensive processing interactively via dedicated graphical user interface (GUI) applications. The consecutive processing steps can be easily automated and the individual time points can be processed independently, which lends itself to trivial parallelization on a high performance cluster (HPC). Here we introduce an automated workflow for processing large multiview, multi-channel, multi-illumination time-lapse LSFM data on a single workstation or in parallel on a HPC. The pipeline relies on snakemake to resolve dependencies among consecutive processing steps and can be easily adapted to any cluster environment for processing LSFM data in a fraction of the time required to collect it.Comment: 13 pages with supplement, LATEX; 1 table, 1 figure, 2 supplementary figures, 2 supplementary lists, 2 supplementary tables; corrected error in results table, results unchange

Indium phosphide based membrane photodetector for optical interconnects on silicon

We have designed, fabricated and characterized an InP-based membrane photodetector on an SOI wafer containing a Si-wiring photonic circuit. New results on RF characterization up to 20 GHz are presented. The detector fabrication is compatible with wafer scale processing steps, guaranteeing compatibility towards future generation electronic IC processing

Hybrid-aligned nematic liquid-crystal modulators fabricated on VLSI circuits

A new method for fabricating analog light modulators on VLSI devices is described. The process is fully compatible with devices fabricated by commercial VLSI foundries, and the assembly of the modulator structures requires a small number of simple processing steps. The modulators are capable of analog amplitude or phase modulation and can operate at video rates and at low voltages (2.2 V). The modulation mechanism and the process yielding the modulator structures are described. Experimental data are presented