Doctor of Philosophy

dissertationHigh Performance Computing (HPC) on-node parallelism is of extreme importance to guarantee and maintain scalability across large clusters of hundreds of thousands of multicore nodes. HPC programming is dominated by the hybrid model "MPI + X", with MPI to exploit the parallelism across the nodes, and "X" as some shared memory parallel programming model to accomplish multicore parallelism across CPUs or GPUs. OpenMP has become the "X" standard de-facto in HPC to exploit the multicore architectures of modern CPUs. Data races are one of the most common and insidious of concurrent errors in shared memory programming models and OpenMP programs are not immune to them. The OpenMP-provided ease of use to parallelizing programs can often make it error-prone to data races which become hard to find in large applications with thousands lines of code. Unfortunately, prior tools are unable to impact practice owing to their poor coverage or poor scalability. In this work, we develop several new approaches for low overhead data race detection. Our approaches aim to guarantee high precision and accuracy of race checking while maintaining a low runtime and memory overhead. We present two race checkers for C/C++ OpenMP programs that target two different classes of programs. The first, ARCHER, is fast but requires large amount of memory, so it ideally targets applications that require only a small portion of the available on-node memory. On the other hand, SWORD strikes a balance between fast zero memory overhead data collection followed by offline analysis that can take a long time, but it often report most races quickly. Given that race checking was impossible for large OpenMP applications, our contributions are the best available advances in what is known to be a difficult NP-complete problem. We performed an extensive evaluation of the tools on existing OpenMP programs and HPC benchmarks. Results show that both tools guarantee to identify all the races of a program in a given run without reporting any false alarms. The tools are user-friendly, hence serve as an important instrument for the daily work of programmers to help them identify data races early during development and production testing. Furthermore, our demonstrated success on real-world applications puts these tools on the top list of debugging tools for scientists at large

OSCAR. A Noise Injection Framework for Testing Concurrent Software

“Moore’s Law” is a well-known observable phenomenon in computer science that describes a visible yearly pattern in processor’s die increase. Even though it has held true for the last 57 years, thermal limitations on how much a processor’s core frequencies can be increased, have led to physical limitations to their performance scaling. The industry has since then shifted towards multicore architectures, which offer much better and scalable performance, while in turn forcing programmers to adopt the concurrent programming paradigm when designing new software, if they wish to make use of this added performance. The use of this paradigm comes with the unfortunate downside of the sudden appearance of a plethora of additional errors in their programs, stemming directly from their (poor) use of concurrency techniques. Furthermore, these concurrent programs themselves are notoriously hard to design and to verify their correctness, with researchers continuously developing new, more effective and effi- cient methods of doing so. Noise injection, the theme of this dissertation, is one such method. It relies on the “probe effect” — the observable shift in the behaviour of concurrent programs upon the introduction of noise into their routines. The abandonment of ConTest, a popular proprietary and closed-source noise injection framework, for testing concurrent software written using the Java programming language, has left a void in the availability of noise injection frameworks for this programming language. To mitigate this void, this dissertation proposes OSCAR — a novel open-source noise injection framework for the Java programming language, relying on static bytecode instrumentation for injecting noise. OSCAR will provide a free and well-documented noise injection tool for research, pedagogical and industry usage. Additionally, we propose a novel taxonomy for categorizing new and existing noise injection heuristics, together with a new method for generating and analysing concurrent software traces, based on string comparison metrics. After noising programs from the IBM Concurrent Benchmark with different heuristics, we observed that OSCAR is highly effective in increasing the coverage of the interleaving space, and that the different heuristics provide diverse trade-offs on the cost and benefit (time/coverage) of the noise injection process.Resumo A “Lei de Moore” é um fenómeno, bem conhecido na área das ciências da computação, que descreve um padrão evidente no aumento anual da densidade de transístores num processador. Mesmo mantendo-se válido nos últimos 57 anos, o aumento do desempenho dos processadores continua garrotado pelas limitações térmicas inerentes `a subida da sua frequência de funciona- mento. Desde então, a industria transitou para arquiteturas multi núcleo, com significativamente melhor e mais escalável desempenho, mas obrigando os programadores a adotar o paradigma de programação concorrente ao desenhar os seus novos programas, para poderem aproveitar o desempenho adicional que advém do seu uso. O uso deste paradigma, no entanto, traz consigo, por consequência, a introdução de uma panóplia de novos erros nos programas, decorrentes diretamente da utilização (inadequada) de técnicas de programação concorrente. Adicionalmente, estes programas concorrentes são conhecidos por serem consideravelmente mais difíceis de desenhar e de validar, quanto ao seu correto funcionamento, incentivando investi- gadores ao desenvolvimento de novos métodos mais eficientes e eficazes de o fazerem. A injeção de ruído, o tema principal desta dissertação, é um destes métodos. Esta baseia-se no “efeito sonda” (do inglês “probe effect”) — caracterizado por uma mudança de comportamento observável em programas concorrentes, ao terem ruído introduzido nas suas rotinas. Com o abandono do Con- Test, uma framework popular, proprietária e de código fechado, de análise dinâmica de programas concorrentes através de injecção de ruído, escritos com recurso `a linguagem de programação Java, viu-se surgir um vazio na oferta de framework de injeção de ruído, para esta mesma linguagem. Para mitigar este vazio, esta dissertação propõe o OSCAR — uma nova framework de injeção de ruído, de código-aberto, para a linguagem de programação Java, que utiliza manipulação estática de bytecode para realizar a introdução de ruído. O OSCAR pretende oferecer uma ferramenta livre e bem documentada de injeção de ruído para fins de investigação, pedagógicos ou até para a indústria. Adicionalmente, a dissertação propõe uma nova taxonomia para categorizar os dife- rentes tipos de heurísticas de injecção de ruídos novos e existentes, juntamente com um método para gerar e analisar traces de programas concorrentes, com base em métricas de comparação de strings. Após inserir ruído em programas do IBM Concurrent Benchmark, com diversas heurísticas, ob- servámos que o OSCAR consegue aumentar significativamente a dimensão da cobertura do espaço de estados de programas concorrentes. Adicionalmente, verificou-se que diferentes heurísticas produzem um leque variado de prós e contras, especialmente em termos de eficácia versus eficiência

Maintaining the correctness of transactional memory programs

Dissertação para obtenção do Grau de Doutor em Engenharia InformáticaThis dissertation addresses the challenge of maintaining the correctness of transactional memory programs, while improving its parallelism with small transactions and relaxed isolation levels. The efficiency of the transactional memory systems depends directly on the level of parallelism, which in turn depends on the conflict rate. A high conflict rate between memory transactions can be addressed by reducing the scope of transactions, but this approach may turn the application prone to the occurrence of atomicity violations. Another way to address this issue is to ignore some of the conflicts by using a relaxed isolation level, such as snapshot isolation, at the cost of introducing write-skews serialization anomalies that break the consistency guarantees provided by a stronger consistency property, such as opacity. In order to tackle the correctness issues raised by the atomicity violations and the write-skew anomalies, we propose two static analysis techniques: one based in a novel static analysis algorithm that works on a dependency graph of program variables and detects atomicity violations; and a second one based in a shape analysis technique supported by separation logic augmented with heap path expressions, a novel representation based on sequences of heap dereferences that certifies if a transactional memory program executing under snapshot isolation is free from writeskew anomalies. The evaluation of the runtime execution of a transactional memory algorithm using snapshot isolation requires a framework that allows an efficient implementation of a multi-version algorithm and, at the same time, enables its comparison with other existing transactional memory algorithms. In the Java programming language there was no framework satisfying both these requirements. Hence, we extended an existing software transactional memory framework that already supported efficient implementations of some transactional memory algorithms, to also support the efficient implementation of multi-version algorithms. The key insight for this extension is the support for storing the transactional metadata adjacent to memory locations. We illustrate the benefits of our approach by analyzing its impact with both single- and multi-version transactional memory algorithms using several transactional workloads.Fundação para a Ciência e Tecnologia - PhD research grant SFRH/BD/41765/2007, and in the research projects Synergy-VM (PTDC/EIA-EIA/113613/2009), and RepComp (PTDC/EIAEIA/ 108963/2008

A Survey of Challenges for Runtime Verification from Advanced Application Domains (Beyond Software)

Runtime verification is an area of formal methods that studies the dynamic analysis of execution traces against formal specifications. Typically, the two main activities in runtime verification efforts are the process of creating monitors from specifications, and the algorithms for the evaluation of traces against the generated monitors. Other activities involve the instrumentation of the system to generate the trace and the communication between the system under analysis and the monitor. Most of the applications in runtime verification have been focused on the dynamic analysis of software, even though there are many more potential applications to other computational devices and target systems. In this paper we present a collection of challenges for runtime verification extracted from concrete application domains, focusing on the difficulties that must be overcome to tackle these specific challenges. The computational models that characterize these domains require to devise new techniques beyond the current state of the art in runtime verification