What Does Aspect-Oriented Programming Mean for Functional Programmers?

Aspect-Oriented Programming (AOP) aims at modularising crosscutting concerns that show up in software. The success of AOP has been almost viral and nearly all areas in Software Engineering and Programming Languages have become "infected" by the AOP bug in one way or another. Interestingly the functional programming community (and, in particular, the pure functional programming community) seems to be resistant to the pandemic. The goal of this paper is to debate the possible causes of the functional programming community's resistance and to raise awareness and interest by showcasing the benefits that could be gained from having a functional AOP language. At the same time, we identify the main challenges and explore the possible design-space

Specification and verification challenges for sequential object-oriented programs

The state of knowledge in how to specify sequential programs in object-oriented languages such as Java and C# and the state of the art in automated verification tools for such programs have made measurable progress in the last several years. This paper describes several remaining challenges and approaches to their solutio

Mixed state Pauli channel parameter estimation

The accuracy of any physical scheme used to estimate the parameter describing the strength of a single qubit Pauli channel can be quantified using standard techniques from quantum estimation theory. It is known that the optimal estimation scheme, with m channel invocations, uses initial states for the systems which are pure and unentangled and provides an uncertainty of O[1/m^(1/2)]. This protocol is analogous to a classical repetition and averaging scheme. We consider estimation schemes where the initial states available are not pure and compare a protocol involving quantum correlated states to independent state protocols analogous to classical repetition schemes. We show, that unlike the pure state case, the quantum correlated state protocol can yield greater estimation accuracy than any independent state protocol. We show that these gains persist even when the system states are separable and, in some cases, when quantum discord is absent after channel invocation. We describe the relevance of these protocols to nuclear magnetic resonance measurements

The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation

Background. 
The complexity and inter-related nature of biological data poses a difficult challenge for data and tool integration. There has been a proliferation of interoperability standards and projects over the past decade, none of which has been widely adopted by the bioinformatics community. Recent attempts have focused on the use of semantics to assist integration, and Semantic Web technologies are being welcomed by this community.

Description. 
SADI – Semantic Automated Discovery and Integration – is a lightweight set of fully standards-compliant Semantic Web service design patterns that simplify the publication of services of the type commonly found in bioinformatics and other scientific domains. Using Semantic Web technologies at every level of the Web services “stack”, SADI services consume and produce instances of OWL Classes following a small number of very straightforward best-practices. In addition, we provide codebases that support these best-practices, and plug-in tools to popular developer and client software that dramatically simplify deployment of services by providers, and the discovery and utilization of those services by their consumers.

Conclusions.
SADI Services are fully compliant with, and utilize only foundational Web standards; are simple to create and maintain for service providers; and can be discovered and utilized in a very intuitive way by biologist end-users. In addition, the SADI design patterns significantly improve the ability of software to automatically discover appropriate services based on user-needs, and automatically chain these into complex analytical workflows. We show that, when resources are exposed through SADI, data compliant with a given ontological model can be automatically gathered, or generated, from these distributed, non-coordinating resources - a behavior we have not observed in any other Semantic system. Finally, we show that, using SADI, data dynamically generated from Web services can be explored in a manner very similar to data housed in static triple-stores, thus facilitating the intersection of Web services and Semantic Web technologies

Performance Testing of Distributed Component Architectures

Performance characteristics, such as response time, throughput andscalability, are key quality attributes of distributed applications. Current practice,however, rarely applies systematic techniques to evaluate performance characteristics.We argue that evaluation of performance is particularly crucial in early developmentstages, when important architectural choices are made. At first glance, thiscontradicts the use of testing techniques, which are usually applied towards the endof a project. In this chapter, we assume that many distributed systems are builtwith middleware technologies, such as the Java 2 Enterprise Edition (J2EE) or theCommon Object Request Broker Architecture (CORBA). These provide servicesand facilities whose implementations are available when architectures are defined.We also note that it is the middleware functionality, such as transaction and persistenceservices, remote communication primitives and threading policy primitives,that dominates distributed system performance. Drawing on these observations, thischapter presents a novel approach to performance testing of distributed applications.We propose to derive application-specific test cases from architecture designs so thatthe performance of a distributed application can be tested based on the middlewaresoftware at early stages of a development process. We report empirical results thatsupport the viability of the approach