Rate-distortion Balanced Data Compression for Wireless Sensor Networks

This paper presents a data compression algorithm with error bound guarantee for wireless sensor networks (WSNs) using compressing neural networks. The proposed algorithm minimizes data congestion and reduces energy consumption by exploring spatio-temporal correlations among data samples. The adaptive rate-distortion feature balances the compressed data size (data rate) with the required error bound guarantee (distortion level). This compression relieves the strain on energy and bandwidth resources while collecting WSN data within tolerable error margins, thereby increasing the scale of WSNs. The algorithm is evaluated using real-world datasets and compared with conventional methods for temporal and spatial data compression. The experimental validation reveals that the proposed algorithm outperforms several existing WSN data compression methods in terms of compression efficiency and signal reconstruction. Moreover, an energy analysis shows that compressing the data can reduce the energy expenditure, and hence expand the service lifespan by several folds.Comment: arXiv admin note: text overlap with arXiv:1408.294

Prospects and limitations of full-text index structures in genome analysis

The combination of incessant advances in sequencing technology producing large amounts of data and innovative bioinformatics approaches, designed to cope with this data flood, has led to new interesting results in the life sciences. Given the magnitude of sequence data to be processed, many bioinformatics tools rely on efficient solutions to a variety of complex string problems. These solutions include fast heuristic algorithms and advanced data structures, generally referred to as index structures. Although the importance of index structures is generally known to the bioinformatics community, the design and potency of these data structures, as well as their properties and limitations, are less understood. Moreover, the last decade has seen a boom in the number of variant index structures featuring complex and diverse memory-time trade-offs. This article brings a comprehensive state-of-the-art overview of the most popular index structures and their recently developed variants. Their features, interrelationships, the trade-offs they impose, but also their practical limitations, are explained and compared

Model-Based Calibration of Filter Imperfections in the Random Demodulator for Compressive Sensing

The random demodulator is a recent compressive sensing architecture providing efficient sub-Nyquist sampling of sparse band-limited signals. The compressive sensing paradigm requires an accurate model of the analog front-end to enable correct signal reconstruction in the digital domain. In practice, hardware devices such as filters deviate from their desired design behavior due to component variations. Existing reconstruction algorithms are sensitive to such deviations, which fall into the more general category of measurement matrix perturbations. This paper proposes a model-based technique that aims to calibrate filter model mismatches to facilitate improved signal reconstruction quality. The mismatch is considered to be an additive error in the discretized impulse response. We identify the error by sampling a known calibrating signal, enabling least-squares estimation of the impulse response error. The error estimate and the known system model are used to calibrate the measurement matrix. Numerical analysis demonstrates the effectiveness of the calibration method even for highly deviating low-pass filter responses. The proposed method performance is also compared to a state of the art method based on discrete Fourier transform trigonometric interpolation.Comment: 10 pages, 8 figures, submitted to IEEE Transactions on Signal Processin