Deep Learning in Cardiology

The medical field is creating large amount of data that physicians are unable to decipher and use efficiently. Moreover, rule-based expert systems are inefficient in solving complicated medical tasks or for creating insights using big data. Deep learning has emerged as a more accurate and effective technology in a wide range of medical problems such as diagnosis, prediction and intervention. Deep learning is a representation learning method that consists of layers that transform the data non-linearly, thus, revealing hierarchical relationships and structures. In this review we survey deep learning application papers that use structured data, signal and imaging modalities from cardiology. We discuss the advantages and limitations of applying deep learning in cardiology that also apply in medicine in general, while proposing certain directions as the most viable for clinical use.Comment: 27 pages, 2 figures, 10 table

Empirical Mode Decomposition (EMD) Based Denoising Method for Heart Sound Signal and Its Performance Analysis

In this paper, a denoising method for heart sound signal based on empirical mode decomposition (EMD) is proposed. To evaluate the performance of the proposed method, extensive simulations are performed using synthetic normal and abnormal heart sound data corrupted with white, colored, exponential and alpha-stable noise under different SNR input values. The performance is evaluated in terms of signal-to-noise ratio (SNR), root mean square error (RMSE), and percent root mean square difference (PRD), and compared with wavelet transform (WT) and total variation (TV) denoising methods. The simulation results show that the proposed method outperforms two other methods in removing three types of noises

Performance Analysis of Fetal-Phonocardiogram Signal Denoising Using The Discrete Wavelet Transform

The obligation for comprehensive fetal heart rate investigation had driven to improve the passive and non-invasive diagnostic instruments despite the USG or CTG method. Fetal phonocardiography (f-PCG) utilizing the auscultation method met the above criteria, but its interpretation frequently disturbed by the presence of noise. For instance, maternal heart and body organ sounds, fetal movements noise, and ambient noise from the environment where it is recording are the noise that corrupted the f-PCG signal. In this work, the use of discrete wavelet transforms (DWT) to eliminate noise in the f-PCG signal with SNR as the performance parameters observed. It was observing the effect of changes in wavelet type and threshold type on the SNR value. The test was carried out on f-PCG data taken from physio.net. Initial SNR values ranged from -26.7 dB to -4.4 dB; after application of DWT procedure to f-PCG, SNR increased significantly. Based on the test results obtained, wavelet type coif1 with the soft threshold gave the best result with 11.69 dB in SNR value. The coif1 had a superior result than other mother wavelets that use in this work, so the fPCG signal analysis for fetal heart rate investigation suggested to use it.The obligation for comprehensive fetal heart rate investigation had driven to improve the passive and non-invasive diagnostic instruments despite the USG or CTG method. Fetal phonocardiography (f-PCG) utilizing the auscultation method met the above criteria, but its interpretation frequently disturbed by the presence of noise. For instance, maternal heart and body organ sounds, fetal movements noise, and ambient noise from the environment where it is recording are the noise that corrupted the f-PCG signal. In this work, the use of discrete wavelet transforms (DWT) to eliminate noise in the f-PCG signal with SNR as the performance parameters observed. It was observing the effect of changes in wavelet type and threshold type on the SNR value. The test was carried out on f-PCG data taken from physio.net. Initial SNR values ranged from -26.7 dB to -4.4 dB; after application of DWT procedure to f-PCG, SNR increased significantly. Based on the test results obtained, wavelet type coif1 with the soft threshold gave the best result with 11.69 dB in SNR value. The coif1 had a superior result than other mother wavelets that use in this work, so the fPCG signal analysis for fetal heart rate investigation suggested to use it

A New Wavelet Denoising Method for Noise Threshold

A new method is used wavelet 1-D experimental signal for denoising. It is provided the optimal adaptive threshold of sub-band based on input signals. The new method: 1) use a new method with low complexity that calculates thresholds; 2) use threshold for each sub-bands; 3) divide three sub-band with range of human hearing and range of the hearing tests are often displayed in the form of an audiogram; 4) use a new denoising algorithm depends on attribute of signal for wavelet coefficients; 5) applies denoising to the detail coefficients. The new method called Adaptive Thresholding with Mean for hybrid Denoising method of hard and soft function (ATMDe) and applied to hearing loss and it is found that it increases the signal-to-noise ratio by more than 114 % and decreases the mean-square-error (MSE). The result of new method with SNR and MSE is higher than standard denoising methods. Hence, the new method was found that has good performance and adaptive threshold value is better than other methods.This study is proposed a new adaptive threshold based on noisy speech for each sub-bands with low complex and it is suitability for range of human hearing and range of hearing test. A new method is used wavelet 1-D experimental signal for denoising. It provided the optimal adaptive threshold of three sub-band with applies to the detail coefficients. The speech enhancement is used of threshoding on the adpated wavelet coefficients, and the results are compared a variety of noisy speech and four well-known benchmark signals. The results, measured objectively by Signal-to-Noise ratio (SNR) and Mean Square Error (MSE), are given for additive white Gaussian noise as well as two different types of noisy environment. The new method called Adaptive Thresholding with Mean for hybrid Denoising method of hard and soft function (ATMDe) and applied to hearing loss and it is found that it increases the signal-to-noise ratio by more than 114% and decreases the mean-square-error (MSE). The result of new method with SNR and MSE is higher than standard denoising methods. Hence, the new method was found that has good performance and adaptive threshold value is better than other methods

A Combined Model for Noise Reduction of Lung Sound Signals Based on Empirical Mode Decomposition and Artificial Neural Network

Computer analysis of Lung Sound (LS) signals has been proposed in recent years as a tool to analyze the lungs' status but there have always been main challenges, including the contamination of LS with environmental noises, which come from different sources of unlike intensities. One of the common methods in noise reduction of LS signals is based on thresholding on Discrete Wavelet Transform (DWT) coefficients or Empirical Mode Decomposition (EMD) of the signal, however, in these methods, it is necessary to calculate the SNR value to determine the appropriate threshold for noise removal. To solve this problem, a combined model based on EMD and Artificial Neural Network (ANN) trained with different SNRs (0, 5, 10, 15, and 20dB) is proposed in this research. The model can denoise white and pink noises in the range of -2 to 20dB without thresholding or even estimating SNR, and at the same time, keep the main content of the LS signal well. The proposed method is also compared with the EMD-custom method, and the results obtained from the SNR, and fit criteria indicate the absolute superiority of the proposed method. For example, at SNR = 0dB, the combined method can improve the SNR by 9.41 and 8.23dB for white and pink noises, respectively, while the corresponding values are respectively 5.89 and 4.31dB for the EMD-Custom method

A Comprehensive Survey on Heart Sound Analysis in the Deep Learning Era

Heart sound auscultation has been demonstrated to be beneficial in clinical usage for early screening of cardiovascular diseases. Due to the high requirement of well-trained professionals for auscultation, automatic auscultation benefiting from signal processing and machine learning can help auxiliary diagnosis and reduce the burdens of training professional clinicians. Nevertheless, classic machine learning is limited to performance improvement in the era of big data. Deep learning has achieved better performance than classic machine learning in many research fields, as it employs more complex model architectures with stronger capability of extracting effective representations. Deep learning has been successfully applied to heart sound analysis in the past years. As most review works about heart sound analysis were given before 2017, the present survey is the first to work on a comprehensive overview to summarise papers on heart sound analysis with deep learning in the past six years 2017--2022. We introduce both classic machine learning and deep learning for comparison, and further offer insights about the advances and future research directions in deep learning for heart sound analysis

An audio processing pipeline for acquiring diagnostic quality heart sounds via mobile phone

Recently, heart sound signals captured using mobile phones have been employed to develop data-driven heart disease detection systems. Such signals are generally captured in person by trained clinicians who can determine if the recorded heart sounds are of diagnosable quality. However, mobile phones have the potential to support heart health diagnostics, even where access to trained medical professionals is limited. To adopt mobile phones as self-diagnostic tools for the masses, we would need to have a mechanism to automatically establish that heart sounds recorded by non-expert users in uncontrolled conditions have the required quality for diagnostic purposes. This paper proposes a quality assessment and enhancement pipeline for heart sounds captured using mobile phones. The pipeline analyzes a heart sound and determines if it has the required quality for diagnostic tasks. Also, in cases where the quality of the captured signal is below the required threshold, the pipeline can improve the quality by applying quality enhancement algorithms. Using this pipeline, we can also provide feedback to users regarding the cause of low-quality signal capture and guide them towards a successful one. We conducted a survey of a group of thirteen clinicians with auscultation skills and experience. The results of this survey were used to inform and validate the proposed quality assessment and enhancement pipeline. We observed a high level of agreement between the survey results and fundamental design decisions within the proposed pipeline. Also, the results indicate that the proposed pipeline can reduce our dependency on trained clinicians for capture of diagnosable heart sounds