An Expressive Language and Efficient Execution System for Software Agents

Software agents can be used to automate many of the tedious, time-consuming information processing tasks that humans currently have to complete manually. However, to do so, agent plans must be capable of representing the myriad of actions and control flows required to perform those tasks. In addition, since these tasks can require integrating multiple sources of remote information ? typically, a slow, I/O-bound process ? it is desirable to make execution as efficient as possible. To address both of these needs, we present a flexible software agent plan language and a highly parallel execution system that enable the efficient execution of expressive agent plans. The plan language allows complex tasks to be more easily expressed by providing a variety of operators for flexibly processing the data as well as supporting subplans (for modularity) and recursion (for indeterminate looping). The executor is based on a streaming dataflow model of execution to maximize the amount of operator and data parallelism possible at runtime. We have implemented both the language and executor in a system called THESEUS. Our results from testing THESEUS show that streaming dataflow execution can yield significant speedups over both traditional serial (von Neumann) as well as non-streaming dataflow-style execution that existing software and robot agent execution systems currently support. In addition, we show how plans written in the language we present can represent certain types of subtasks that cannot be accomplished using the languages supported by network query engines. Finally, we demonstrate that the increased expressivity of our plan language does not hamper performance; specifically, we show how data can be integrated from multiple remote sources just as efficiently using our architecture as is possible with a state-of-the-art streaming-dataflow network query engine

Using Links to prototype a Database Wiki

Both relational databases and wikis have strengths that make them attractive for use in collaborative applications. In the last decade, database-backed Web applications have been used extensively to develop valuable shared biological references called curated databases. Databases offer many advantages such as scalability, query optimization and concurrency control, but are not easy to use and lack other features needed for collaboration. Wikis have become very popular for early-stage biocuration projects because they are easy to use, encourage sharing and collaboration, and provide built-in support for archiving, history-tracking and annotation. However, curation projects often outgrow the limited capabilities of wikis for structuring and efficiently querying data at scale, necessitating a painful phase transition to a database-backed Web application. We perceive a need for a new class of general-purpose system, which we call a Database Wiki, that combines flexible wiki-like support for collaboration with robust database-like capabilities for structuring and querying data. This paper presents DBWiki, a design prototype for such a system written in the Web programming language Links. We present the architecture, typical use, and wiki markup language design for DBWiki and discuss features of Links that provided unique advantages for rapid Web/database application prototyping

Web and Semantic Web Query Languages

A number of techniques have been developed to facilitate powerful data retrieval on the Web and Semantic Web. Three categories of Web query languages can be distinguished, according to the format of the data they can retrieve: XML, RDF and Topic Maps. This article introduces the spectrum of languages falling into these categories and summarises their salient aspects. The languages are introduced using common sample data and query types. Key aspects of the query languages considered are stressed in a conclusion

Algebraic incremental maintenance of XML views

International audienceMaterialized views can bring important performance benefits when querying XML documents. In the presence of XML document changes, materialized views need to be updated to faithfully reflect the changed document. In this work, we present an algebraic approach for propagating source updates to XML materialized views expressed in a powerful XML tree pattern formalism. Our approach differs from the state of the art in the area in two important ways. First, it relies on set-oriented, algebraic operations, to be contrasted with node-based previous approaches. Second, it exploits state-of-the-art features of XML stores and XML query evaluation engines, notably XML structural identifiers and associated structural join algorithms. We present algorithms for determining how updates should be propagated to views, and highlight the benefits of our approach over existing algorithms through a series of experiments

A performant XQuery to SQL translator

We describe a largely complete and efficient XQuery to SQL translation for XML publishing. Our translation supports the entire XQuery language, except for functions, if statements and upwards navigation axes. The system has three important properties. First, it preserves the correct XQuery semantics. This is accomplished by first translating XQuery into core-XQuery, using a complete XQuery implementation, Galax. Second, we optimize the resulting SQL queries. We develop a comprehensive framework for optimizing the XQuery to SQL translation, which is effective for a wide range of XQuery workloads. Third, our translation is platform independent. Our system achieves high degree of efficiency on a wide range of relational systems. This paper reports an extensive experimental validation on several XQuery workloads, using MySQL, PostgreSQL, and SQL Server, and compares this approach with five native XQuery engines: Galax (the newer, optimized version), Saxon, QizOpen, IMDB and Quexo