1,090 research outputs found
Efficiently listing bounded length st-paths
The problem of listing the shortest simple (loopless) -paths in a
graph has been studied since the early 1960s. For a non-negatively weighted
graph with vertices and edges, the most efficient solution is an
algorithm for directed graphs by Yen and Lawler
[Management Science, 1971 and 1972], and an algorithm for
the undirected version by Katoh et al. [Networks, 1982], both using
space. In this work, we consider a different parameterization for this problem:
instead of bounding the number of -paths output, we bound their length. For
the bounded length parameterization, we propose new non-trivial algorithms
matching the time complexity of the classic algorithms but using only
space. Moreover, we provide a unified framework such that the solutions to both
parameterizations -- the classic -shortest and the new length-bounded paths
-- can be seen as two different traversals of a same tree, a Dijkstra-like and
a DFS-like traversal, respectively.Comment: 12 pages, accepted to IWOCA 201
Efficient Enumeration of Induced Subtrees in a K-Degenerate Graph
In this paper, we address the problem of enumerating all induced subtrees in
an input k-degenerate graph, where an induced subtree is an acyclic and
connected induced subgraph. A graph G = (V, E) is a k-degenerate graph if for
any its induced subgraph has a vertex whose degree is less than or equal to k,
and many real-world graphs have small degeneracies, or very close to small
degeneracies. Although, the studies are on subgraphs enumeration, such as
trees, paths, and matchings, but the problem addresses the subgraph
enumeration, such as enumeration of subgraphs that are trees. Their induced
subgraph versions have not been studied well. One of few example is for
chordless paths and cycles. Our motivation is to reduce the time complexity
close to O(1) for each solution. This type of optimal algorithms are proposed
many subgraph classes such as trees, and spanning trees. Induced subtrees are
fundamental object thus it should be studied deeply and there possibly exist
some efficient algorithms. Our algorithm utilizes nice properties of
k-degeneracy to state an effective amortized analysis. As a result, the time
complexity is reduced to O(k) time per induced subtree. The problem is solved
in constant time for each in planar graphs, as a corollary
Interpreting and using CPDAGs with background knowledge
We develop terminology and methods for working with maximally oriented
partially directed acyclic graphs (maximal PDAGs). Maximal PDAGs arise from
imposing restrictions on a Markov equivalence class of directed acyclic graphs,
or equivalently on its graphical representation as a completed partially
directed acyclic graph (CPDAG), for example when adding background knowledge
about certain edge orientations. Although maximal PDAGs often arise in
practice, causal methods have been mostly developed for CPDAGs. In this paper,
we extend such methodology to maximal PDAGs. In particular, we develop
methodology to read off possible ancestral relationships, we introduce a
graphical criterion for covariate adjustment to estimate total causal effects,
and we adapt the IDA and joint-IDA frameworks to estimate multi-sets of
possible causal effects. We also present a simulation study that illustrates
the gain in identifiability of total causal effects as the background knowledge
increases. All methods are implemented in the R package pcalg.Comment: 17 pages, 6 figures, UAI 201
Listing Subgraphs by Cartesian Decomposition
We investigate a decomposition technique for listing problems in graphs and set systems. It is based on the Cartesian product of some iterators, which list the solutions of simpler problems. Our ideas applies to several problems, and we illustrate one of them in depth, namely, listing all minimum spanning trees of a weighted graph G. Here iterators over the spanning trees for unweighted graphs can be obtained by a suitable modification of the listing algorithm by [Shioura et al., SICOMP 1997], and the decomposition of G is obtained by suitably partitioning its edges according to their weights. By combining these iterators in a Cartesian product scheme that employs Gray coding, we give the first algorithm which lists all minimum spanning trees of G in constant delay, where the delay is the time elapsed between any two consecutive outputs. Our solution requires polynomial preprocessing time and uses polynomial space
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