830 research outputs found
Compressive X-ray phase tomography based on the transport of intensity equation
We develop and implement a compressive reconstruction method for tomographic
recovery of refractive index distribution for weakly attenuating objects in a
microfocus X-ray system. This is achieved through the development of a
discretized operator modeling both the transport of intensity equation and
X-ray transform that is suitable for iterative reconstruction techniques
Deep learning in computational microscopy
We propose to use deep convolutional neural networks (DCNNs) to perform 2D and 3D computational imaging. Specifically, we investigate three different applications. We first try to solve the 3D inverse scattering problem based on learning a huge number of training target and speckle pairs. We also demonstrate a new DCNN architecture to perform Fourier ptychographic Microscopy (FPM) reconstruction, which achieves high-resolution phase recovery with considerably less data than standard FPM. Finally, we employ DCNN models that can predict focused 2D fluorescent microscopic images from blurred images captured at overfocused or underfocused planes.Published versio
PyHST2: an hybrid distributed code for high speed tomographic reconstruction with iterative reconstruction and a priori knowledge capabilities
We present the PyHST2 code which is in service at ESRF for phase-contrast and
absorption tomography. This code has been engineered to sustain the high data
flow typical of the third generation synchrotron facilities (10 terabytes per
experiment) by adopting a distributed and pipelined architecture. The code
implements, beside a default filtered backprojection reconstruction, iterative
reconstruction techniques with a-priori knowledge. These latter are used to
improve the reconstruction quality or in order to reduce the required data
volume and reach a given quality goal. The implemented a-priori knowledge
techniques are based on the total variation penalisation and a new recently
found convex functional which is based on overlapping patches.
We give details of the different methods and their implementations while the
code is distributed under free license.
We provide methods for estimating, in the absence of ground-truth data, the
optimal parameters values for a-priori techniques
Compressive Holographic Video
Compressed sensing has been discussed separately in spatial and temporal
domains. Compressive holography has been introduced as a method that allows 3D
tomographic reconstruction at different depths from a single 2D image. Coded
exposure is a temporal compressed sensing method for high speed video
acquisition. In this work, we combine compressive holography and coded exposure
techniques and extend the discussion to 4D reconstruction in space and time
from one coded captured image. In our prototype, digital in-line holography was
used for imaging macroscopic, fast moving objects. The pixel-wise temporal
modulation was implemented by a digital micromirror device. In this paper we
demonstrate temporal super resolution with multiple depths recovery
from a single image. Two examples are presented for the purpose of recording
subtle vibrations and tracking small particles within 5 ms.Comment: 12 pages, 6 figure
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