Algorithm to derive inherent optical properties from remote sensing reflectance in turbid and eutrophic lakes

Inherent optical properties play an important role in understanding the biogeochemical processes of lakes by providing proxies for a variety of biogeochemical quantities, including phytoplankton pigments. However, to date, it has been difficult to accurately derive the absorption coefficient of phytoplankton [aph(λ)] in turbid and eutrophic waters from remote sensing. A large dataset of remote sensing of reflectance [ Rrs (λ)] and absorption coefficients was measured for samples collected from lakes in the middle and lower reaches of the Yangtze River and Huai River basin (MLYHR), China. In the process of scattering correction of spectrophotometric measurements, the particulate absorption coefficients [ap(λ)] were first assumed to have no absorption in the near-infrared (NIR) wavelength. This assumption was corrected by estimating the particulate absorption coefficients at 750 nm [ap(750)] from the concentrations of chlorophyll-a (Chla) and suspended particulate matter, which was added to the ap(λ) as a baseline. The resulting mean spectral mass-specific absorption coefficient of the nonalgal particles (NAPs) was consistent with previous work. A novel iterative IOP inversion model was then designed to retrieve the total nonwater absorption coefficients [anw(λ)] and backscattering coefficients of particulates [bbp(λ)], aph(λ), and adg (λ) [absorption coefficients of NAP and colored dissolved organic matter (CDOM)] from Rrs (λ) in turbid inland lakes. The proposed algorithm performed better than previously published models in deriving anw(λ) and bbp(λ) in this region. The proposed algorithm performed well in estimating the aph(λ) for wavelengths \u3e 500 nm for the calibration dataset [N = 285, unbiased absolute percentage difference (UAPD) = 55.22%, root mean square error (RMSE) = 0.44 m−1] and for the validation dataset (N = 57, UAPD = 56.17%, RMSE = 0.71 m−1). This algorithm was then applied to Sentinel-3A Ocean and Land Color Instrument (OLCI) satellite data, and was validated with field data. This study provides an example of how to use local data to devise an algorithm to obtain IOPs, and in particular, a ph (λ), using satellite Rr s (λ) data in turbid inland waters

Hyperspectral retrievals of phytoplankton absorption and chlorophyll-a in inland and nearshore coastal waters

Following more than two decades of research and developments made possible through various proof-of-concept hyperspectral remote sensing missions, it has been anticipated that hyperspectral imaging would enhance the accuracy of remotely sensed in-water products. This study investigates such expected improvements and demonstrates the utility of hyperspectral radiometric measurements for the retrieval of near-surface phytoplankton properties1, i.e., phytoplankton absorption spectra (aph) and biomass evaluated through examining the concentration of chlorophyll-a (Chla). Using hyperspectral data (409–800 nm at ~5 nm resolution) and a class of neural networks known as Mixture Density Networks (MDN) (Pahlevan et al., 2020), we show that the median error in aph retrievals is reduced two-to-three times (N = 722) compared to that from heritage ocean color algorithms. The median error associated with our aph retrieval across all the visible bands varies between 20 and 30%. Similarly, Chla retrievals exhibit significant improvements (i.e., more than two times; N = 1902), with respect to existing algorithms that rely on select spectral bands. Using an independent matchup dataset acquired near-concurrently with the acquisition of the Hyperspectral Imager for the Coastal Ocean (HICO) images, the models are found to perform well, but at reduced levels due to uncertainties in the atmospheric correction. The mapped spatial distribution of Chla maps and aph spectra for selected HICO swaths further solidify MDNs as promising machine-learning models that have the potential to generate highly accurate aquatic remote sensing products in inland and coastal waters. For aph retrieval to improve further, two immediate research avenues are recommended: a) the network architecture requires additional optimization to enable a simultaneous retrieval of multiple in-water parameters (e.g., aph, Chla, absorption by colored dissolved organic matter), and b) the training dataset should be extended to enhance model generalizability. This feasibility analysis using MDNs provides strong evidence that high-quality, global hyperspectral data will open new pathways toward a better understanding of biodiversity in aquatic ecosystems

Towards high fidelity mapping of global inland water quality using earth observation data

This body of work aims to contribute advancements towards developing globally applicable water quality retrieval models using Earth Observation data for freshwater systems. Eutrophication and increasing prevalence of potentially toxic algal blooms among global inland water bodies have become a major ecological concersn and require direct attention. There is now a growing necessity to develop pragmatic approaches that allow timely and effective extrapolation of local processes, to spatially resolved global products. This study provides one of the first assessments of the state-ofthe-art for trophic status (chlorophyll-a) retrievals for small water bodies using Sentinel-3 Ocean and Land Color Imager (OLCI). Multiple fieldwork campaigns were undertaken for the collection of common aquatic biogeophysical and bio-optical parameters that were used to validate current atmospheric correction and chlorophyll-a retrieval algorithms. The study highlighted the difficulties of obtaining robust retrieval estimates from a coarse spatial resolution sensor from highly variable eutrophic water bodies. Atmospheric correction remains a difficult challenge to operational freshwater monitoring, however, the study further validated previous work confirming applicability of simple, empirically derived retrieval algorithms using top-of-atmosphere data. The apparent scarcity of paired in-situ optical and biogeophysical data for productive inland waters also hinders our capability to develop and validate robust retrieval algorithms. Radiative transfer modeling was used to fill this gap through the development of a novel synthetic dataset of top-of-atmosphere and bottom-of-atmosphere reflectances, which attempts to encompass the immense natural optical variability present in inland waters. Novel aspects of the synthetic dataset include: 1) physics-based, two-layered, size and type specific phytoplankton IOPs for mixed eukaryotic/cyanobacteria 6 assemblages, 2) calculations of mixed assemblage chl-a fluorescence, 3) modeled phycocyanin concentration derived from assemblage based phycocyanin absorption, 4) and paired sensor-specific TOA reflectances which include optically extreme cases and contribution of green vegetation adjacency. The synthetic bottom-of-atmosphere reflectance spectra were compiled into 13 distinct optical water types similar to those discovered using in-situ data. Inspection showed similar relationships and ranges of concentrations and inherent optical properties of natural waters. This dataset was used to calculate typical surviving water-leaving signal at top-of-atmosphere, as well as first order calculations of the signal-to-noise-ratio (SNR) for the various optical water types, a first for productive inland waters, as well as conduct a sensitivity analysis of cyanobacteria detection from top-of-atmosphere. Finally, the synthetic dataset was used to train and test four state-of-the-art machine learning architectures for multi-parameter retrieval and cross-sensor capability. Initial results provide reliable estimates of water quality parameters and inherent optical properties over a highly dynamic range of water types, at various spectral and spatial sensor resolutions. It is hoped the results of this work incrementally improves inland water Earth observation on multiple aspects of the forward and inverse modelling process, and provides an improvement in our capabilities for routine, global monitoring of inland water quality

Optical Classification of the Remote Sensing Reflectance and Its Application in Deriving the Specific Phytoplankton Absorption in Optically Complex Lakes

Optical water types (OWTs) were identified from remote sensing reflectance (Rrs(λ)) values in a field-measured dataset of several large lakes in the lower reaches of the Yangtze and Huai River (LYHR) Basin. Four OWTs were determined from normalized remote sensing reflectance spectra (NRrs(λ)) using the k-means clustering approach, and were identified in the Sentinel 3A OLCI (Ocean Land Color Instrument) image data over lakes in the LYHR Basin. The results showed that 1) Each OWT is associated with different bio-optical properties, such as the concentration of chlorophyll-a (Chla), suspended particulate matter (SPM), proportion of suspended particulate inorganic matter (SPIM), and absorption coefficient of each component. One optical water type showed an obvious characteristic with a high contribution of mineral particles, while one type was mostly determined by a high content of phytoplankton. The other types belonged to the optically mixed water types. 2) Class-specific Chla inversion algorithms performed better for all water types, except type 4, compared to the overall dataset. In addition, class-specific inversion algorithms for estimating the Chla-specific absorption coefficient of phytoplankton at 443 nm (a*ph(443)) were developed based on the relationship between a*ph(443) and Chla of each OWT. The spatial variations in the class-specific model-derived a*ph(443) values were illustrated for 2 March 2017, and 24 October 2017. 3) The dominant water type and the Shannon index (H) were used to characterize the optical variability or similarity of the lakes in the LYHR Basin using cloud-free OLCI images in 2017. A high optical variation was located in the western and southern parts of Lake Taihu, the southern part of Lake Hongze, Lake Chaohu, and several small lakes near the Yangtze River, while the northern part of Lake Hongze had a low optical diversity. This work demonstrates the potential and necessity of optical classification in estimating bio-optical parameters using class-specific inversion algorithms and monitoring of the optical variations in optically complex and dynamic lake waters