Approximating Edit Distance Within Constant Factor in Truly Sub-Quadratic Time

Edit distance is a measure of similarity of two strings based on the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. The edit distance can be computed exactly using a dynamic programming algorithm that runs in quadratic time. Andoni, Krauthgamer and Onak (2010) gave a nearly linear time algorithm that approximates edit distance within approximation factor $\text{poly}(\log n)$. In this paper, we provide an algorithm with running time $\tilde{O}(n^{2-2/7})$ that approximates the edit distance within a constant factor

On k-Column Sparse Packing Programs

We consider the class of packing integer programs (PIPs) that are column sparse, i.e. there is a specified upper bound k on the number of constraints that each variable appears in. We give an (ek+o(k))-approximation algorithm for k-column sparse PIPs, improving on recent results of $k^2\cdot 2^k$ and $O(k^2)$. We also show that the integrality gap of our linear programming relaxation is at least 2k-1; it is known that k-column sparse PIPs are $\Omega(k/ \log k)$-hard to approximate. We also extend our result (at the loss of a small constant factor) to the more general case of maximizing a submodular objective over k-column sparse packing constraints.Comment: 19 pages, v3: additional detail

A new Lenstra-type Algorithm for Quasiconvex Polynomial Integer Minimization with Complexity 2^O(n log n)

We study the integer minimization of a quasiconvex polynomial with quasiconvex polynomial constraints. We propose a new algorithm that is an improvement upon the best known algorithm due to Heinz (Journal of Complexity, 2005). This improvement is achieved by applying a new modern Lenstra-type algorithm, finding optimal ellipsoid roundings, and considering sparse encodings of polynomials. For the bounded case, our algorithm attains a time-complexity of s (r l M d)^{O(1)} 2^{2n log_2(n) + O(n)} when M is a bound on the number of monomials in each polynomial and r is the binary encoding length of a bound on the feasible region. In the general case, s l^{O(1)} d^{O(n)} 2^{2n log_2(n) +O(n)}. In each we assume d>= 2 is a bound on the total degree of the polynomials and l bounds the maximum binary encoding size of the input.Comment: 28 pages, 10 figure