New sublinear methods in the struggle against classical problems

Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2010.Cataloged from PDF version of thesis.Includes bibliographical references (p. 129-134).We study the time and query complexity of approximation algorithms that access only a minuscule fraction of the input, focusing on two classical sources of problems: combinatorial graph optimization and manipulation of strings. The tools we develop find applications outside of the area of sublinear algorithms. For instance, we obtain a more efficient approximation algorithm for edit distance and distributed algorithms for combinatorial problems on graphs that run in a constant number of communication rounds. Combinatorial Graph Optimization Problems: The graph optimization problems considered by us include vertex cover, maximum matching, and dominating set. A graph algorithm is traditionally called a constant-time algorithm if it runs in time that is a function of only the maximum vertex degree, and in particular, does not depend on the number of vertices in the graph. We show a general local computation framework that allows for transforming many classical greedy approximation algorithms into constant-time approximation algorithms for the optimal solution size. By applying the framework, we obtain the first constant-time algorithm that approximates the maximum matching size up to an additive En, where E is an arbitrary positive constant, and n is the number of vertices in the graph. It is known that a purely additive En approximation is not computable in constant time for vertex cover and dominating set. We show that nevertheless, such an approximation is possible for a wide class of graphs, which includes planar graphs (and other minor-free families of graphs) and graphs of subexponential growth (a common property of networks). This result is obtained via locally computing a good partition of the input graph in our local computation framework. The tools and algorithms developed for these problems find several other applications: " Our methods can be used to construct local distributed approximation algorithms for some combinatorial optimization problems. " Our matching algorithm yields the first constant-time testing algorithm for distinguishing bounded-degree graphs that have a perfect matching from those far from having this property. " We give a simple proof that there is a constant-time algorithm distinguishing bounded-degree graphs that are planar (or in general, have a minor-closed property) from those that are far from planarity (or the given minor-closed property, respectively). Our tester is also much more efficient than the original tester of Benjamini, Schramm, and Shapira (STOC 2008). Edit Distance. We study a new asymmetric query model for edit distance. In this model, the input consists of two strings x and y, and an algorithm can access y in an unrestricted manner (without charge), while being charged for querying every symbol of x. We design an algorithm in the asymmetric query model that makes a small number of queries to distinguish the case when the edit distance between x and y is small from the case when it is large. Our result in the asymmetric query model gives rise to a near-linear time algorithm that approximates the edit distance between two strings to within a polylogarithmic factor. For strings of length n and every fixed E > 0, the algorithm computes a (log n)0(/0) approximation in n1i' time. This is an exponential improvement over the previously known near-linear time approximation factor 20( log (Andoni and Onak, STOC 2009; building on Ostrovsky and Rabani, J. ACM 2007). The algorithm of Andoni and Onak was the first to run in O(n 2 -) time, for any fixed constant 6 > 0, and obtain a subpolynomial, n"(o), approximation factor, despite a sequence of papers. We provide a nearly-matching lower bound on the number of queries. Our lower bound is the first to expose hardness of edit distance stemming from the input strings being "repetitive", which means that many of their substrings are approximately identical. Consequently, our lower bound provides the first rigorous separation on the complexity of approximation between edit distance and Ulam distance.by Krzysztof Onak.Ph.D

A Quasi-Polynomial Time Partition Oracle for Graphs with an Excluded Minor

Motivated by the problem of testing planarity and related properties, we study the problem of designing efficient {\em partition oracles}. A {\em partition oracle} is a procedure that, given access to the incidence lists representation of a bounded-degree graph $G= (V,E)$ and a parameter \eps, when queried on a vertex $v\in V$, returns the part (subset of vertices) which $v$ belongs to in a partition of all graph vertices. The partition should be such that all parts are small, each part is connected, and if the graph has certain properties, the total number of edges between parts is at most \eps |V|. In this work we give a partition oracle for graphs with excluded minors whose query complexity is quasi-polynomial in 1/\eps, thus improving on the result of Hassidim et al. ({\em Proceedings of FOCS 2009}) who gave a partition oracle with query complexity exponential in 1/\eps. This improvement implies corresponding improvements in the complexity of testing planarity and other properties that are characterized by excluded minors as well as sublinear-time approximation algorithms that work under the promise that the graph has an excluded minor.Comment: 13 pages, 1 figur

Distributed Maximum Matching in Bounded Degree Graphs

We present deterministic distributed algorithms for computing approximate maximum cardinality matchings and approximate maximum weight matchings. Our algorithm for the unweighted case computes a matching whose size is at least (1-\eps) times the optimal in \Delta^{O(1/\eps)} + O\left(\frac{1}{\eps^2}\right) \cdot\log^*(n) rounds where $n$ is the number of vertices in the graph and $\Delta$ is the maximum degree. Our algorithm for the edge-weighted case computes a matching whose weight is at least (1-\eps) times the optimal in \log(\min\{1/\wmin,n/\eps\})^{O(1/\eps)}\cdot(\Delta^{O(1/\eps)}+\log^*(n)) rounds for edge-weights in [\wmin,1]. The best previous algorithms for both the unweighted case and the weighted case are by Lotker, Patt-Shamir, and Pettie~(SPAA 2008). For the unweighted case they give a randomized (1-\eps)-approximation algorithm that runs in O((\log(n)) /\eps^3) rounds. For the weighted case they give a randomized (1/2-\eps)-approximation algorithm that runs in O(\log(\eps^{-1}) \cdot \log(n)) rounds. Hence, our results improve on the previous ones when the parameters $\Delta$, \eps and \wmin are constants (where we reduce the number of runs from $O(\log(n))$ to $O(\log^*(n))$), and more generally when $\Delta$, 1/\eps and 1/\wmin are sufficiently slowly increasing functions of $n$. Moreover, our algorithms are deterministic rather than randomized.Comment: arXiv admin note: substantial text overlap with arXiv:1402.379

An Efficient Partitioning Oracle for Bounded-Treewidth Graphs

Partitioning oracles were introduced by Hassidim et al. (FOCS 2009) as a generic tool for constant-time algorithms. For any epsilon > 0, a partitioning oracle provides query access to a fixed partition of the input bounded-degree minor-free graph, in which every component has size poly(1/epsilon), and the number of edges removed is at most epsilon*n, where n is the number of vertices in the graph. However, the oracle of Hassidimet al. makes an exponential number of queries to the input graph to answer every query about the partition. In this paper, we construct an efficient partitioning oracle for graphs with constant treewidth. The oracle makes only O(poly(1/epsilon)) queries to the input graph to answer each query about the partition. Examples of bounded-treewidth graph classes include k-outerplanar graphs for fixed k, series-parallel graphs, cactus graphs, and pseudoforests. Our oracle yields poly(1/epsilon)-time property testing algorithms for membership in these classes of graphs. Another application of the oracle is a poly(1/epsilon)-time algorithm that approximates the maximum matching size, the minimum vertex cover size, and the minimum dominating set size up to an additive epsilon*n in graphs with bounded treewidth. Finally, the oracle can be used to test in poly(1/epsilon) time whether the input bounded-treewidth graph is k-colorable or perfect.Comment: Full version of a paper to appear in RANDOM 201

Every Property of Hyperfinite Graphs is Testable

A k-disc around a vertex v of a graph G=(V,E) is the subgraph induced by all vertices of distance at most k from v. We show that the structure of a planar graph on n vertices, and with constant maximum degree d, is determined, up to the modification (insertion or deletion) of at most εdn edges, by the frequency of k-discs for certain k=k(ε,d) that is independent of the size of the graph. We can replace planar graphs by any hyperfinite class of graphs, which includes, for example, every graph class that does not contain a set of forbidden minors. A pure combinatorial consequence of this result is that two d-bounded degree graphs that have similar frequency vectors (that is, the l_1 difference between the frequency vectors is small) are close to isomorphic (where close here means that by inserting or deleting not too many edges in one of them, it becomes isomorphic to the other). We also obtain the following new results in the area of property testing, which are essentially equivalent to the above statement. We prove that (a) graph isomorphism is testable for every class of hyperfinite graphs, (b) every graph property is testable for every class of hyperfinite graphs, (c) every hyperfinite graph property is testable in the bounded degree graph model, (d) A large class of graph parameters is approximable for hyperfinite graphs. Our results also give a partial explanation of the success of motifs in the analysis of complex networks

Every Property of Outerplanar Graphs is Testable

A D-disc around a vertex v of a graph G=(V,E) is the subgraph induced by all vertices of distance at most D from v. We show that the structure of an outerplanar graph on n vertices is determined, up to modification (insertion or deletion) of at most epsilon n edges, by a set of D-discs around the vertices, for D=D(epsilon) that is independent of the size of the graph. Such a result was already known for planar graphs (and any hyperfinite graph class), in the limited case of bounded degree graphs (that is, their maximum degree is bounded by some fixed constant, independent of |V|). We prove this result with no assumption on the degree of the graph. A pure combinatorial consequence of this result is that two outerplanar graphs that share the same local views are close to be isomorphic. We also obtain the following property testing results in the sparse graph model: * graph isomorphism is testable for outerplanar graphs by poly(log n) queries. * every graph property is testable for outerplanar graphs by poly(log n) queries. We note that we can replace outerplanar graphs by a slightly more general family of k-edge-outerplanar graphs. The only previous general testing results, as above, where known for forests (Kusumoto and Yoshida), and for some power-law graphs that are extremely close to be bounded degree hyperfinite (by Ito)