8,231 research outputs found
Sample-path solutions for simulation optimization problems and stochastic variational inequalities
inequality;simulation;optimization
Learning probability distributions generated by finite-state machines
We review methods for inference of probability distributions generated by probabilistic automata and related models for sequence generation. We focus on methods that can be proved to learn in the inference
in the limit and PAC formal models. The methods we review are state merging and state splitting methods for probabilistic deterministic automata and the recently developed spectral method for nondeterministic probabilistic automata. In both cases, we derive them from a high-level algorithm described in terms of the Hankel matrix of the distribution to be learned, given as an oracle, and then describe how to adapt that algorithm to account for the error introduced by a finite sample.Peer ReviewedPostprint (author's final draft
A Verified Information-Flow Architecture
SAFE is a clean-slate design for a highly secure computer system, with
pervasive mechanisms for tracking and limiting information flows. At the lowest
level, the SAFE hardware supports fine-grained programmable tags, with
efficient and flexible propagation and combination of tags as instructions are
executed. The operating system virtualizes these generic facilities to present
an information-flow abstract machine that allows user programs to label
sensitive data with rich confidentiality policies. We present a formal,
machine-checked model of the key hardware and software mechanisms used to
dynamically control information flow in SAFE and an end-to-end proof of
noninterference for this model.
We use a refinement proof methodology to propagate the noninterference
property of the abstract machine down to the concrete machine level. We use an
intermediate layer in the refinement chain that factors out the details of the
information-flow control policy and devise a code generator for compiling such
information-flow policies into low-level monitor code. Finally, we verify the
correctness of this generator using a dedicated Hoare logic that abstracts from
low-level machine instructions into a reusable set of verified structured code
generators
Categorical Ontology of Complex Systems, Meta-Systems and Theory of Levels: The Emergence of Life, Human Consciousness and Society
Single cell interactomics in simpler organisms, as well as somatic cell interactomics in multicellular organisms, involve biomolecular interactions in complex signalling pathways that were recently represented in modular terms by quantum automata with âreversible behaviorâ representing normal cell cycling and division. Other implications of such quantum automata, modular modeling of signaling pathways and cell differentiation during development are in the fields of neural plasticity and brain development leading to quantum-weave dynamic patterns and specific molecular processes underlying extensive memory, learning, anticipation mechanisms and the emergence of human consciousness during the early brain development in children. Cell interactomics is here represented for the first time as a mixture of âclassicalâ states that determine molecular dynamics subject to Boltzmann statistics and âsteady-stateâ, metabolic (multi-stable) manifolds, together with âconfigurationâ spaces of metastable quantum states emerging from complex quantum dynamics of interacting networks of biomolecules, such as proteins and nucleic acids that are now collectively defined as quantum interactomics. On the other hand, the time dependent evolution over several generations of cancer cells --that are generally known to undergo frequent and extensive genetic mutations and, indeed, suffer genomic transformations at the chromosome level (such as extensive chromosomal aberrations found in many colon cancers)-- cannot be correctly represented in the âstandardâ terms of quantum automaton modules, as the normal somatic cells can. This significant difference at the cancer cell genomic level is therefore reflected in major changes in cancer cell interactomics often from one cancer cell âcycleâ to the next, and thus it requires substantial changes in the modeling strategies, mathematical tools and experimental designs aimed at understanding cancer mechanisms. Novel solutions to this important problem in carcinogenesis are proposed and experimental validation procedures are suggested. From a medical research and clinical standpoint, this approach has important consequences for addressing and preventing the development of cancer resistance to medical therapy in ongoing clinical trials involving stage III cancer patients, as well as improving the designs of future clinical trials for cancer treatments.\ud
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KEYWORDS: Emergence of Life and Human Consciousness;\ud
Proteomics; Artificial Intelligence; Complex Systems Dynamics; Quantum Automata models and Quantum Interactomics; quantum-weave dynamic patterns underlying human consciousness; specific molecular processes underlying extensive memory, learning, anticipation mechanisms and human consciousness; emergence of human consciousness during the early brain development in children; Cancer cell âcyclingâ; interacting networks of proteins and nucleic acids; genetic mutations and chromosomal aberrations in cancers, such as colon cancer; development of cancer resistance to therapy; ongoing clinical trials involving stage III cancer patientsâ possible improvements of the designs for future clinical trials and cancer treatments. \ud
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Spectral Simplicity of Apparent Complexity, Part I: The Nondiagonalizable Metadynamics of Prediction
Virtually all questions that one can ask about the behavioral and structural
complexity of a stochastic process reduce to a linear algebraic framing of a
time evolution governed by an appropriate hidden-Markov process generator. Each
type of question---correlation, predictability, predictive cost, observer
synchronization, and the like---induces a distinct generator class. Answers are
then functions of the class-appropriate transition dynamic. Unfortunately,
these dynamics are generically nonnormal, nondiagonalizable, singular, and so
on. Tractably analyzing these dynamics relies on adapting the recently
introduced meromorphic functional calculus, which specifies the spectral
decomposition of functions of nondiagonalizable linear operators, even when the
function poles and zeros coincide with the operator's spectrum. Along the way,
we establish special properties of the projection operators that demonstrate
how they capture the organization of subprocesses within a complex system.
Circumventing the spurious infinities of alternative calculi, this leads in the
sequel, Part II, to the first closed-form expressions for complexity measures,
couched either in terms of the Drazin inverse (negative-one power of a singular
operator) or the eigenvalues and projection operators of the appropriate
transition dynamic.Comment: 24 pages, 3 figures, 4 tables; current version always at
http://csc.ucdavis.edu/~cmg/compmech/pubs/sdscpt1.ht
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