Machine Learning and Integrative Analysis of Biomedical Big Data.

Recent developments in high-throughput technologies have accelerated the accumulation of massive amounts of omics data from multiple sources: genome, epigenome, transcriptome, proteome, metabolome, etc. Traditionally, data from each source (e.g., genome) is analyzed in isolation using statistical and machine learning (ML) methods. Integrative analysis of multi-omics and clinical data is key to new biomedical discoveries and advancements in precision medicine. However, data integration poses new computational challenges as well as exacerbates the ones associated with single-omics studies. Specialized computational approaches are required to effectively and efficiently perform integrative analysis of biomedical data acquired from diverse modalities. In this review, we discuss state-of-the-art ML-based approaches for tackling five specific computational challenges associated with integrative analysis: curse of dimensionality, data heterogeneity, missing data, class imbalance and scalability issues

Modeling Fault Propagation Paths in Power Systems: A New Framework Based on Event SNP Systems With Neurotransmitter Concentration

To reveal fault propagation paths is one of the most critical studies for the analysis of power system security; however, it is rather dif cult. This paper proposes a new framework for the fault propagation path modeling method of power systems based on membrane computing.We rst model the fault propagation paths by proposing the event spiking neural P systems (Ev-SNP systems) with neurotransmitter concentration, which can intuitively reveal the fault propagation path due to the ability of its graphics models and parallel knowledge reasoning. The neurotransmitter concentration is used to represent the probability and gravity degree of fault propagation among synapses. Then, to reduce the dimension of the Ev-SNP system and make them suitable for large-scale power systems, we propose a model reduction method for the Ev-SNP system and devise its simpli ed model by constructing single-input and single-output neurons, called reduction-SNP system (RSNP system). Moreover, we apply the RSNP system to the IEEE 14- and 118-bus systems to study their fault propagation paths. The proposed approach rst extends the SNP systems to a large-scaled application in critical infrastructures from a single element to a system-wise investigation as well as from the post-ante fault diagnosis to a new ex-ante fault propagation path prediction, and the simulation results show a new success and promising approach to the engineering domain

A Comprehensive Survey of Deep Learning in Remote Sensing: Theories, Tools and Challenges for the Community

In recent years, deep learning (DL), a re-branding of neural networks (NNs), has risen to the top in numerous areas, namely computer vision (CV), speech recognition, natural language processing, etc. Whereas remote sensing (RS) possesses a number of unique challenges, primarily related to sensors and applications, inevitably RS draws from many of the same theories as CV; e.g., statistics, fusion, and machine learning, to name a few. This means that the RS community should be aware of, if not at the leading edge of, of advancements like DL. Herein, we provide the most comprehensive survey of state-of-the-art RS DL research. We also review recent new developments in the DL field that can be used in DL for RS. Namely, we focus on theories, tools and challenges for the RS community. Specifically, we focus on unsolved challenges and opportunities as it relates to (i) inadequate data sets, (ii) human-understandable solutions for modelling physical phenomena, (iii) Big Data, (iv) non-traditional heterogeneous data sources, (v) DL architectures and learning algorithms for spectral, spatial and temporal data, (vi) transfer learning, (vii) an improved theoretical understanding of DL systems, (viii) high barriers to entry, and (ix) training and optimizing the DL.Comment: 64 pages, 411 references. To appear in Journal of Applied Remote Sensin