1,530 research outputs found
Dynamic Decomposition of Spatiotemporal Neural Signals
Neural signals are characterized by rich temporal and spatiotemporal dynamics
that reflect the organization of cortical networks. Theoretical research has
shown how neural networks can operate at different dynamic ranges that
correspond to specific types of information processing. Here we present a data
analysis framework that uses a linearized model of these dynamic states in
order to decompose the measured neural signal into a series of components that
capture both rhythmic and non-rhythmic neural activity. The method is based on
stochastic differential equations and Gaussian process regression. Through
computer simulations and analysis of magnetoencephalographic data, we
demonstrate the efficacy of the method in identifying meaningful modulations of
oscillatory signals corrupted by structured temporal and spatiotemporal noise.
These results suggest that the method is particularly suitable for the analysis
and interpretation of complex temporal and spatiotemporal neural signals
Graph analysis of functional brain networks: practical issues in translational neuroscience
The brain can be regarded as a network: a connected system where nodes, or
units, represent different specialized regions and links, or connections,
represent communication pathways. From a functional perspective communication
is coded by temporal dependence between the activities of different brain
areas. In the last decade, the abstract representation of the brain as a graph
has allowed to visualize functional brain networks and describe their
non-trivial topological properties in a compact and objective way. Nowadays,
the use of graph analysis in translational neuroscience has become essential to
quantify brain dysfunctions in terms of aberrant reconfiguration of functional
brain networks. Despite its evident impact, graph analysis of functional brain
networks is not a simple toolbox that can be blindly applied to brain signals.
On the one hand, it requires a know-how of all the methodological steps of the
processing pipeline that manipulates the input brain signals and extract the
functional network properties. On the other hand, a knowledge of the neural
phenomenon under study is required to perform physiological-relevant analysis.
The aim of this review is to provide practical indications to make sense of
brain network analysis and contrast counterproductive attitudes
Efficient transfer entropy analysis of non-stationary neural time series
Information theory allows us to investigate information processing in neural
systems in terms of information transfer, storage and modification. Especially
the measure of information transfer, transfer entropy, has seen a dramatic
surge of interest in neuroscience. Estimating transfer entropy from two
processes requires the observation of multiple realizations of these processes
to estimate associated probability density functions. To obtain these
observations, available estimators assume stationarity of processes to allow
pooling of observations over time. This assumption however, is a major obstacle
to the application of these estimators in neuroscience as observed processes
are often non-stationary. As a solution, Gomez-Herrero and colleagues
theoretically showed that the stationarity assumption may be avoided by
estimating transfer entropy from an ensemble of realizations. Such an ensemble
is often readily available in neuroscience experiments in the form of
experimental trials. Thus, in this work we combine the ensemble method with a
recently proposed transfer entropy estimator to make transfer entropy
estimation applicable to non-stationary time series. We present an efficient
implementation of the approach that deals with the increased computational
demand of the ensemble method's practical application. In particular, we use a
massively parallel implementation for a graphics processing unit to handle the
computationally most heavy aspects of the ensemble method. We test the
performance and robustness of our implementation on data from simulated
stochastic processes and demonstrate the method's applicability to
magnetoencephalographic data. While we mainly evaluate the proposed method for
neuroscientific data, we expect it to be applicable in a variety of fields that
are concerned with the analysis of information transfer in complex biological,
social, and artificial systems.Comment: 27 pages, 7 figures, submitted to PLOS ON
Measuring electrophysiological connectivity by power envelope correlation: a technical review on MEG methods
The human brain can be divided into multiple areas, each responsible for different aspects of behaviour. Healthy brain function relies upon efficient connectivity between these areas and, in recent years, neuroimaging has been revolutionised by an ability to estimate this connectivity. In this paper we discuss measurement of network connectivity using magnetoencephalography (MEG), a technique capable of imaging electrophysiological brain activity with good (~5mm) spatial resolution and excellent (~1ms) temporal resolution. The rich information content of MEG facilitates many disparate measures of connectivity between spatially separate regions and in this paper we discuss a single metric known as power envelope correlation. We review in detail the methodology required to measure power envelope correlation including i) projection of MEG data into source space, ii) removing confounds introduced by the MEG inverse problem and iii) estimation of connectivity itself. In this way, we aim to provide researchers with a description of the key steps required to assess envelope based functional networks, which are thought to represent an intrinsic mode of coupling in the human brain. We highlight the principal findings of the techniques discussed, and furthermore, we show evidence that this method can probe how the brain forms and dissolves multiple transient networks on a rapid timescale in order to support current processing demand. Overall, power envelope correlation offers a unique and verifiable means to gain novel insights into network coordination and is proving to be of significant value in elucidating the neural dynamics of the human connectome in health and disease
Loss of brain inter-frequency hubs in Alzheimer's disease
Alzheimer's disease (AD) causes alterations of brain network structure and
function. The latter consists of connectivity changes between oscillatory
processes at different frequency channels. We proposed a multi-layer network
approach to analyze multiple-frequency brain networks inferred from
magnetoencephalographic recordings during resting-states in AD subjects and
age-matched controls. Main results showed that brain networks tend to
facilitate information propagation across different frequencies, as measured by
the multi-participation coefficient (MPC). However, regional connectivity in AD
subjects was abnormally distributed across frequency bands as compared to
controls, causing significant decreases of MPC. This effect was mainly
localized in association areas and in the cingulate cortex, which acted, in the
healthy group, as a true inter-frequency hub. MPC values significantly
correlated with memory impairment of AD subjects, as measured by the total
recall score. Most predictive regions belonged to components of the
default-mode network that are typically affected by atrophy, metabolism
disruption and amyloid-beta deposition. We evaluated the diagnostic power of
the MPC and we showed that it led to increased classification accuracy (78.39%)
and sensitivity (91.11%). These findings shed new light on the brain functional
alterations underlying AD and provide analytical tools for identifying
multi-frequency neural mechanisms of brain diseases.Comment: 27 pages, 6 figures, 3 tables, 3 supplementary figure
Performance comparison of functional and effective brain connectivity methods
Functional and effective connectivity estimates based on electroencephalography (EEG) and magnetoencephalography (MEG) are widely used to understand and reveal new insight into the dynamic behaviour of the brain. However, with a large number of different connectivity methods that are currently available, there is a lack of systematic comparative studies including a statistical evaluation of their performance to understand the strengths and shortcomings of competing methods.
Here, we present a simulation framework to evaluate and compare the performance of connectivity estimators on simulated, yet realistic electromagnetic recordings. We assess the ability of various methods to reconstruct cortical networks, while systematically varying specific parameters which are of significant importance during the simulation, preprocessing
or inverse source reconstruction of realistic EEG recordings. A decisive advantage of this simulation framework, when compared with models utilised in other studies, is the integration of volume conduction artifacts. This is achieved by modelling the propagation of electric or magnetic fields from an electric primary current source through biological tissue towards measurement sensors. Subsequently, inverse source reconstruction approaches are applied to estimate the temporal activity patterns of underlying network nodes. The implementation of these concepts enabled the analysis of parameters involved during forward modelling and source reconstruction which may affect the estimation of connectivity on the source level.
The experiments carried out in this work unfold the behaviour of estimators regarding the effect of signal-to-noise ratio (SNR), length of data sets, various phase shifts between correlated signals, the impact of regularization used in inverse source reconstruction, errors in the localization and varying network sizes. For each simulation, strengths and weaknesses of methods are pointed out. Furthermore, pitfalls and obstacles researchers might come across when applying particular estimators on EEG recordings are discussed.
Building on the insight gained from simulation studies, the final part of the thesis analyses the performance of connectivity estimators when applied to resting-state EEG recordings. Network reconstructions with priority on the alpha frequency band reveal a
default-mode-network (DMN) with dominant posterior-to-anterior information flow. We detected no significant variations in the amount of correctly identified network links between connectivity methods. However, we discuss differences in connectivity spectra that emerged, which affect the interpretability and applicability of methods
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