4,726 research outputs found
Hyperspectral colon tissue cell classification
A novel algorithm to discriminate between normal and malignant tissue cells of the human colon is presented. The microscopic level images of human colon tissue cells were acquired using hyperspectral imaging technology at contiguous wavelength intervals of visible light. While hyperspectral imagery data provides a wealth of information, its large size normally means high computational processing complexity. Several methods exist to avoid the so-called curse of dimensionality and hence reduce the computational complexity. In this study, we experimented with Principal Component Analysis (PCA) and two modifications of Independent Component Analysis (ICA). In the first stage of the algorithm, the extracted components are used to separate four constituent parts of the colon tissue: nuclei, cytoplasm, lamina propria, and lumen. The segmentation is performed in an unsupervised fashion using the nearest centroid clustering algorithm. The segmented image is further used, in the second stage of the classification algorithm, to exploit the spatial relationship between the labeled constituent parts. Experimental results using supervised Support Vector Machines (SVM) classification based on multiscale morphological features reveal the discrimination between normal and malignant tissue cells with a reasonable degree of accuracy
Hierarchical image simplification and segmentation based on Mumford-Shah-salient level line selection
Hierarchies, such as the tree of shapes, are popular representations for
image simplification and segmentation thanks to their multiscale structures.
Selecting meaningful level lines (boundaries of shapes) yields to simplify
image while preserving intact salient structures. Many image simplification and
segmentation methods are driven by the optimization of an energy functional,
for instance the celebrated Mumford-Shah functional. In this paper, we propose
an efficient approach to hierarchical image simplification and segmentation
based on the minimization of the piecewise-constant Mumford-Shah functional.
This method conforms to the current trend that consists in producing
hierarchical results rather than a unique partition. Contrary to classical
approaches which compute optimal hierarchical segmentations from an input
hierarchy of segmentations, we rely on the tree of shapes, a unique and
well-defined representation equivalent to the image. Simply put, we compute for
each level line of the image an attribute function that characterizes its
persistence under the energy minimization. Then we stack the level lines from
meaningless ones to salient ones through a saliency map based on extinction
values defined on the tree-based shape space. Qualitative illustrations and
quantitative evaluation on Weizmann segmentation evaluation database
demonstrate the state-of-the-art performance of our method.Comment: Pattern Recognition Letters, Elsevier, 201
Accurate and reliable segmentation of the optic disc in digital fundus images
We describe a complete pipeline for the detection and accurate automatic segmentation of the optic disc in digital fundus images. This procedure provides separation of vascular information and accurate inpainting of vessel-removed images, symmetry-based optic disc localization, and fitting of incrementally complex contour models at increasing resolutions using information related to inpainted images and vessel masks. Validation experiments, performed on a large dataset of images of healthy and pathological eyes, annotated by experts and partially graded with a quality label, demonstrate the good performances of the proposed approach. The method is able to detect the optic disc and trace its contours better than the other systems presented in the literature and tested on the same data. The average error in the obtained contour masks is reasonably close to the interoperator errors and suitable for practical applications. The optic disc segmentation pipeline is currently integrated in a complete software suite for the semiautomatic quantification of retinal vessel properties from fundus camera images (VAMPIRE)
Joint segmentation and classification of retinal arteries/veins from fundus images
Objective Automatic artery/vein (A/V) segmentation from fundus images is
required to track blood vessel changes occurring with many pathologies
including retinopathy and cardiovascular pathologies. One of the clinical
measures that quantifies vessel changes is the arterio-venous ratio (AVR) which
represents the ratio between artery and vein diameters. This measure
significantly depends on the accuracy of vessel segmentation and classification
into arteries and veins. This paper proposes a fast, novel method for semantic
A/V segmentation combining deep learning and graph propagation.
Methods A convolutional neural network (CNN) is proposed to jointly segment
and classify vessels into arteries and veins. The initial CNN labeling is
propagated through a graph representation of the retinal vasculature, whose
nodes are defined as the vessel branches and edges are weighted by the cost of
linking pairs of branches. To efficiently propagate the labels, the graph is
simplified into its minimum spanning tree.
Results The method achieves an accuracy of 94.8% for vessels segmentation.
The A/V classification achieves a specificity of 92.9% with a sensitivity of
93.7% on the CT-DRIVE database compared to the state-of-the-art-specificity and
sensitivity, both of 91.7%.
Conclusion The results show that our method outperforms the leading previous
works on a public dataset for A/V classification and is by far the fastest.
Significance The proposed global AVR calculated on the whole fundus image
using our automatic A/V segmentation method can better track vessel changes
associated to diabetic retinopathy than the standard local AVR calculated only
around the optic disc.Comment: Preprint accepted in Artificial Intelligence in Medicin
Effective Cloud Detection and Segmentation using a Gradient-Based Algorithm for Satellite Imagery; Application to improve PERSIANN-CCS
Being able to effectively identify clouds and monitor their evolution is one
important step toward more accurate quantitative precipitation estimation and
forecast. In this study, a new gradient-based cloud-image segmentation
technique is developed using tools from image processing techniques. This
method integrates morphological image gradient magnitudes to separable cloud
systems and patches boundaries. A varying scale-kernel is implemented to reduce
the sensitivity of image segmentation to noise and capture objects with various
finenesses of the edges in remote-sensing images. The proposed method is
flexible and extendable from single- to multi-spectral imagery. Case studies
were carried out to validate the algorithm by applying the proposed
segmentation algorithm to synthetic radiances for channels of the Geostationary
Operational Environmental Satellites (GOES-R) simulated by a high-resolution
weather prediction model. The proposed method compares favorably with the
existing cloud-patch-based segmentation technique implemented in the
PERSIANN-CCS (Precipitation Estimation from Remotely Sensed Information using
Artificial Neural Network - Cloud Classification System) rainfall retrieval
algorithm. Evaluation of event-based images indicates that the proposed
algorithm has potential to improve rain detection and estimation skills with an
average of more than 45% gain comparing to the segmentation technique used in
PERSIANN-CCS and identifying cloud regions as objects with accuracy rates up to
98%
A Novel Model of Image Segmentation Based on Watershed Algorithm
A novel model of image segmentation based on watershed method is proposed in this paper. To prevent the oversegmentation of traditional watershed, our proposed algorithm
has five stages. Firstly, the morphological reconstruction is applied to smooth the flat area
and preserve the edge of the image. Secondly, multiscale morphological gradient is
used to avoid the thickening and merging of
the edges. Thirdly, for contrast enhancement,
the top/bottom hat transformation is used.
Fourthly, the morphological gradient of an image is modified by imposing regional minima
at the location of both the internal and the external markers. Finally, a weighted function is
used to combine the top/bottom hat transformation algorithm and the markers algorithm
to get the new algorithm. The experimental results show the superiority of the new algorithm
in terms of suppression over-segmentation
Delineation of line patterns in images using B-COSFIRE filters
Delineation of line patterns in images is a basic step required in various
applications such as blood vessel detection in medical images, segmentation of
rivers or roads in aerial images, detection of cracks in walls or pavements,
etc. In this paper we present trainable B-COSFIRE filters, which are a model of
some neurons in area V1 of the primary visual cortex, and apply it to the
delineation of line patterns in different kinds of images. B-COSFIRE filters
are trainable as their selectivity is determined in an automatic configuration
process given a prototype pattern of interest. They are configurable to detect
any preferred line structure (e.g. segments, corners, cross-overs, etc.), so
usable for automatic data representation learning. We carried out experiments
on two data sets, namely a line-network data set from INRIA and a data set of
retinal fundus images named IOSTAR. The results that we achieved confirm the
robustness of the proposed approach and its effectiveness in the delineation of
line structures in different kinds of images.Comment: International Work Conference on Bioinspired Intelligence, July
10-13, 201
A graph-based mathematical morphology reader
This survey paper aims at providing a "literary" anthology of mathematical
morphology on graphs. It describes in the English language many ideas stemming
from a large number of different papers, hence providing a unified view of an
active and diverse field of research
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