A Bayesian model for brain tumor classification using clinical-based features

Proceedings of: IEEE International Conference on Image Processing (ICIP 2014). Paris, October 27-30, 2014.This paper tackles the problem of automatic brain tumor classification from Magnetic Resonance Imaging (MRI) where, traditionally, general-purpose texture and shape features extracted from the Region of Interest (tumor) have become the usual parameterization of the problem. Two main contributions are made in this context. First, a novel set of clinical-based features that intend to model intuitions and expert knowledge of physicians is suggested. Second, a system is proposed that is able to fuse multiple individual scores (based on a particular MRI sequence and a pathological indicator present in that sequence) by using a Bayesian model that produces a global system decision. This approximation provides a quite flexible solution able to handle missing data, which becomes a very likely case in a realistic scenario where the number clinical tests varies from one patient to another. Furthermore, the Bayesian model provides extra information concerning the uncertainty of the final decision. Our experimental results prove that the use of clinical-based feature leads to a significant increment of performance in terms of Area Under the Curve (AUC) when compared to a state-of-the art reference. Furthermore, the proposed Bayesian fusion model clearly outperforms other fusion schemes, especially when few diagnostic tests are available.Publicad

Federated Learning for Predictive Healthcare Analytics: From theory to real world applications

In the contemporary landscape, machine learning has a pervasive impact across virtually all industries. However, the success of these systems hinges on the accessibility of training data. In today's world, every device generates data, which can serve as the building blocks for future technologies. Conventional machine learning methods rely on centralized data for training, but the availability of sufficient and valid data is often hindered by privacy concerns. Data privacy is the main concern while developing a healthcare system. One of the technique which allow decentralized learning is Federated Learning. Researchers have been actively applying this approach in various domains and have received a positive response. This paper underscores the significance of employing Federated Learning in the healthcare sector, emphasizing the wealth of data present in hospitals and electronic health records that could be used to train medical systems

BEYİN TÜMÖRÜ TANISI İÇİN YAPAY ZEKA STRATEJİLERİ MR'DA SEGMENTASYON VE SINIFLANDIRMA STRATEJİLERİ

Beyin tümörü, toplumda her geçen gün daha yaygın hale gelen en ölümcül hastalıklardan biridir. Yapılan istatistiksel çalışmalarda beyin tümörünün dünyadaki yayılımının her geçen gün daha geniş kitlelere ulaştığı görülmektedir (Kaplan, 2020)

Longitudinal Brain Tumor Tracking, Tumor Grading, and Patient Survival Prediction Using MRI

This work aims to develop novel methods for brain tumor classification, longitudinal brain tumor tracking, and patient survival prediction. Consequently, this dissertation proposes three tasks. First, we develop a framework for brain tumor segmentation prediction in longitudinal multimodal magnetic resonance imaging (mMRI) scans, comprising two methods: feature fusion and joint label fusion (JLF). The first method fuses stochastic multi-resolution texture features with tumor cell density features, in order to obtain tumor segmentation predictions in follow-up scans from a baseline pre-operative timepoint. The second method utilizes JLF to combine segmentation labels obtained from (i) the stochastic texture feature-based and Random Forest (RF)-based tumor segmentation method; and (ii) another state-of-the-art tumor growth and segmentation method known as boosted Glioma Image Segmentation and Registration (GLISTRboost, or GB). With the advantages of feature fusion and label fusion, we achieve state-of-the-art brain tumor segmentation prediction. Second, we propose a deep neural network (DNN) learning-based method for brain tumor type and subtype grading using phenotypic and genotypic data, following the World Health Organization (WHO) criteria. In addition, the classification method integrates a cellularity feature which is derived from the morphology of a pathology image to improve classification performance. The proposed method achieves state-of-the-art performance for tumor grading following the new CNS tumor grading criteria. Finally, we investigate brain tumor volume segmentation, tumor subtype classification, and overall patient survival prediction, and then we propose a new context- aware deep learning method, known as the Context Aware Convolutional Neural Network (CANet). Using the proposed method, we participated in the Multimodal Brain Tumor Segmentation Challenge 2019 (BraTS 2019) for brain tumor volume segmentation and overall survival prediction tasks. In addition, we also participated in the Radiology-Pathology Challenge 2019 (CPM-RadPath 2019) for Brain Tumor Subtype Classification, organized by the Medical Image Computing & Computer Assisted Intervention (MICCAI) Society. The online evaluation results show that the proposed methods offer competitive performance from their use of state-of-the-art methods in tumor volume segmentation, promising performance on overall survival prediction, and state-of-the-art performance on tumor subtype classification. Moreover, our result was ranked second place in the testing phase of the CPM-RadPath 2019