Analysis of Brain Imaging Data for the Detection of Early Age Autism Spectrum Disorder Using Transfer Learning Approaches for Internet of Things

In recent years, advanced magnetic resonance imaging (MRI) methods including functional magnetic resonance imaging (fMRI) and structural magnetic resonance imaging (sMRI) have indicated an increase in the prevalence of neuropsychiatric disorders such as autism spectrum disorder (ASD), effects one out of six children worldwide. Data driven techniques along with medical image analysis techniques, such as computer-assisted diagnosis (CAD), benefiting from deep learning. With the use of artificial intelligence (AI) and IoT-based intelligent approaches, it would be convenient to support autistic children to adopt the new atmospheres. In this paper, we classify and represent learning tasks of the most powerful deep learning network such as convolution neural network (CNN) and transfer learning algorithm on a combination of data from autism brain imaging data exchange (ABIDE I and ABIDE II) datasets. Due to their four-dimensional nature (three spatial dimensions and one temporal dimension), the resting state-fMRI (rs-fMRI) data can be used to develop diagnostic biomarkers for brain dysfunction. ABIDE is a collaboration of global scientists, where ABIDE-I and ABIDE-II consists of 1112 rs-fMRI datasets from 573 typical control (TC) and 539 autism individuals, and 1114 rs-fMRI from 521 autism and 593 typical control individuals respectively, which were collected from 17 different sites. Our proposed optimized version of CNN achieved 81.56% accuracy. This outperforms prior conventional approaches presented only on the ABIDE I datasets

Neuroimaging of structural pathology and connectomics in traumatic brain injury: Toward personalized outcome prediction.

Recent contributions to the body of knowledge on traumatic brain injury (TBI) favor the view that multimodal neuroimaging using structural and functional magnetic resonance imaging (MRI and fMRI, respectively) as well as diffusion tensor imaging (DTI) has excellent potential to identify novel biomarkers and predictors of TBI outcome. This is particularly the case when such methods are appropriately combined with volumetric/morphometric analysis of brain structures and with the exploration of TBI-related changes in brain network properties at the level of the connectome. In this context, our present review summarizes recent developments on the roles of these two techniques in the search for novel structural neuroimaging biomarkers that have TBI outcome prognostication value. The themes being explored cover notable trends in this area of research, including (1) the role of advanced MRI processing methods in the analysis of structural pathology, (2) the use of brain connectomics and network analysis to identify outcome biomarkers, and (3) the application of multivariate statistics to predict outcome using neuroimaging metrics. The goal of the review is to draw the community's attention to these recent advances on TBI outcome prediction methods and to encourage the development of new methodologies whereby structural neuroimaging can be used to identify biomarkers of TBI outcome

Development of High Angular Resolution Diffusion Imaging Analysis Paradigms for the Investigation of Neuropathology

Diffusion weighted magnetic resonance imaging (DW-MRI), provides unique insight into the microstructure of neural white matter tissue, allowing researchers to more fully investigate white matter disorders. The abundance of clinical research projects incorporating DW-MRI into their acquisition protocols speaks to the value this information lends to the study of neurological disease. However, the most widespread DW-MRI technique, diffusion tensor imaging (DTI), possesses serious limitations which restrict its utility in regions of complex white matter. Fueled by advances in DW-MRI acquisition protocols and technologies, a group of exciting new DW-MRI models, developed to address these concerns, are now becoming available to clinical researchers. The emergence of these new imaging techniques, categorized as high angular resolution diffusion imaging (HARDI), has generated the need for sophisticated computational neuroanatomic techniques able to account for the high dimensionality and structure of HARDI data. The goal of this thesis is the development of such techniques utilizing prominent HARDI data models. Specifically, methodologies for spatial normalization, population atlas building and structural connectivity have been developed and validated. These methods form the core of a comprehensive analysis paradigm allowing the investigation of local white matter microarcitecture, as well as, systemic properties of neuronal connectivity. The application of this framework to the study of schizophrenia and the autism spectrum disorders demonstrate its sensitivity sublte differences in white matter organization, as well as, its applicability to large population DW-MRI studies

Imaging Informatics and the Human Brain Project: the Role of Structure, Review

(no abstract

Brain encoding of saltatory velocity-scaled somatosensory array in glabrous hand among neurotypical adults

Neurons in human somatosensory cortex are somatotopically organized, with sensation from the lower limbs mediated by neurons near the midline of the brain, whereas sensations from the upper body, hands and orofacial surfaces are mediated by neurons located more laterally in a sequential map. Neurons in Brodmann\u27s area (BA) 3b are exquisitely sensitive to tactile stimulation of these skin surfaces. Moreover, the location, velocity and direction of tactile stimuli on the skin\u27s surface are discriminable features of somatosensory processing, however their role in fine motor control and passive detection are poorly understood in health, and as a neurotherapeutic agent in sensorimotor rehabilitation. To better understand the representation and processing of dynamic saltatory tactile arrays in the human somatosensory cortex, high resolution functional magnetic resonance (fMRI) is utilized to delineate neural networks involved in processing these complex somatosensory events to the glabrous surface of the hand. The principal goal of this dissertation is to map the relation between a dynamic saltatory pneumatic stimulus array delivered at 3 different velocities on the glabrous hand and the evoked blood-oxygen level-dependent (BOLD) brain response, hypothesized to involve a network consisting of primary and secondary somatosensory cortices (S1 and S2), insular cortex, posterior parietal cortex (PPC), and cerebellar nuclei. A random-balanced block design with fMRI will be used to record the BOLD response in healthy right-handed adults. Development of precise stimulus velocities, rapid rise-fall transitions, salient amplitude, is expected to optimize the BOLD response. Advisor: Steven M. Barlo

Graph analysis of functional brain networks: practical issues in translational neuroscience

The brain can be regarded as a network: a connected system where nodes, or units, represent different specialized regions and links, or connections, represent communication pathways. From a functional perspective communication is coded by temporal dependence between the activities of different brain areas. In the last decade, the abstract representation of the brain as a graph has allowed to visualize functional brain networks and describe their non-trivial topological properties in a compact and objective way. Nowadays, the use of graph analysis in translational neuroscience has become essential to quantify brain dysfunctions in terms of aberrant reconfiguration of functional brain networks. Despite its evident impact, graph analysis of functional brain networks is not a simple toolbox that can be blindly applied to brain signals. On the one hand, it requires a know-how of all the methodological steps of the processing pipeline that manipulates the input brain signals and extract the functional network properties. On the other hand, a knowledge of the neural phenomenon under study is required to perform physiological-relevant analysis. The aim of this review is to provide practical indications to make sense of brain network analysis and contrast counterproductive attitudes

Partial Volume Segmentation of Brain MRI Scans of any Resolution and Contrast

Partial voluming (PV) is arguably the last crucial unsolved problem in Bayesian segmentation of brain MRI with probabilistic atlases. PV occurs when voxels contain multiple tissue classes, giving rise to image intensities that may not be representative of any one of the underlying classes. PV is particularly problematic for segmentation when there is a large resolution gap between the atlas and the test scan, e.g., when segmenting clinical scans with thick slices, or when using a high-resolution atlas. In this work, we present PV-SynthSeg, a convolutional neural network (CNN) that tackles this problem by directly learning a mapping between (possibly multi-modal) low resolution (LR) scans and underlying high resolution (HR) segmentations. PV-SynthSeg simulates LR images from HR label maps with a generative model of PV, and can be trained to segment scans of any desired target contrast and resolution, even for previously unseen modalities where neither images nor segmentations are available at training. PV-SynthSeg does not require any preprocessing, and runs in seconds. We demonstrate the accuracy and flexibility of the method with extensive experiments on three datasets and 2,680 scans. The code is available at https://github.com/BBillot/SynthSeg.Comment: accepted for MICCAI 202