SKIRT: the design of a suite of input models for Monte Carlo radiative transfer simulations

The Monte Carlo method is the most popular technique to perform radiative transfer simulations in a general 3D geometry. The algorithms behind and acceleration techniques for Monte Carlo radiative transfer are discussed extensively in the literature, and many different Monte Carlo codes are publicly available. On the contrary, the design of a suite of components that can be used for the distribution of sources and sinks in radiative transfer codes has received very little attention. The availability of such models, with different degrees of complexity, has many benefits. For example, they can serve as toy models to test new physical ingredients, or as parameterised models for inverse radiative transfer fitting. For 3D Monte Carlo codes, this requires algorithms to efficiently generate random positions from 3D density distributions. We describe the design of a flexible suite of components for the Monte Carlo radiative transfer code SKIRT. The design is based on a combination of basic building blocks (which can be either analytical toy models or numerical models defined on grids or a set of particles) and the extensive use of decorators that combine and alter these building blocks to more complex structures. For a number of decorators, e.g. those that add spiral structure or clumpiness, we provide a detailed description of the algorithms that can be used to generate random positions. Advantages of this decorator-based design include code transparency, the avoidance of code duplication, and an increase in code maintainability. Moreover, since decorators can be chained without problems, very complex models can easily be constructed out of simple building blocks. Finally, based on a number of test simulations, we demonstrate that our design using customised random position generators is superior to a simpler design based on a generic black-box random position generator.Comment: 15 pages, 4 figures, accepted for publication in Astronomy and Computin

A heuristic-based approach to code-smell detection

Encapsulation and data hiding are central tenets of the object oriented paradigm. Deciding what data and behaviour to form into a class and where to draw the line between its public and private details can make the difference between a class that is an understandable, flexible and reusable abstraction and one which is not. This decision is a difficult one and may easily result in poor encapsulation which can then have serious implications for a number of system qualities. It is often hard to identify such encapsulation problems within large software systems until they cause a maintenance problem (which is usually too late) and attempting to perform such analysis manually can also be tedious and error prone. Two of the common encapsulation problems that can arise as a consequence of this decomposition process are data classes and god classes. Typically, these two problems occur together – data classes are lacking in functionality that has typically been sucked into an over-complicated and domineering god class. This paper describes the architecture of a tool which automatically detects data and god classes that has been developed as a plug-in for the Eclipse IDE. The technique has been evaluated in a controlled study on two large open source systems which compare the tool results to similar work by Marinescu, who employs a metrics-based approach to detecting such features. The study provides some valuable insights into the strengths and weaknesses of the two approache

A Survey on Compiler Autotuning using Machine Learning

Since the mid-1990s, researchers have been trying to use machine-learning based approaches to solve a number of different compiler optimization problems. These techniques primarily enhance the quality of the obtained results and, more importantly, make it feasible to tackle two main compiler optimization problems: optimization selection (choosing which optimizations to apply) and phase-ordering (choosing the order of applying optimizations). The compiler optimization space continues to grow due to the advancement of applications, increasing number of compiler optimizations, and new target architectures. Generic optimization passes in compilers cannot fully leverage newly introduced optimizations and, therefore, cannot keep up with the pace of increasing options. This survey summarizes and classifies the recent advances in using machine learning for the compiler optimization field, particularly on the two major problems of (1) selecting the best optimizations and (2) the phase-ordering of optimizations. The survey highlights the approaches taken so far, the obtained results, the fine-grain classification among different approaches and finally, the influential papers of the field.Comment: version 5.0 (updated on September 2018)- Preprint Version For our Accepted Journal @ ACM CSUR 2018 (42 pages) - This survey will be updated quarterly here (Send me your new published papers to be added in the subsequent version) History: Received November 2016; Revised August 2017; Revised February 2018; Accepted March 2018

Search based software engineering: Trends, techniques and applications

© ACM, 2012. This is the author's version of the work. It is posted here by permission of ACM for your personal use. Not for redistribution. The definitive version is available from the link below.In the past five years there has been a dramatic increase in work on Search-Based Software Engineering (SBSE), an approach to Software Engineering (SE) in which Search-Based Optimization (SBO) algorithms are used to address problems in SE. SBSE has been applied to problems throughout the SE lifecycle, from requirements and project planning to maintenance and reengineering. The approach is attractive because it offers a suite of adaptive automated and semiautomated solutions in situations typified by large complex problem spaces with multiple competing and conflicting objectives. This article provides a review and classification of literature on SBSE. The work identifies research trends and relationships between the techniques applied and the applications to which they have been applied and highlights gaps in the literature and avenues for further research.EPSRC and E

Model based test suite minimization using metaheuristics

Software testing is one of the most widely used methods for quality assurance and fault detection purposes. However, it is one of the most expensive, tedious and time consuming activities in software development life cycle. Code-based and specification-based testing has been going on for almost four decades. Model-based testing (MBT) is a relatively new approach to software testing where the software models as opposed to other artifacts (i.e. source code) are used as primary source of test cases. Models are simplified representation of a software system and are cheaper to execute than the original or deployed system. The main objective of the research presented in this thesis is the development of a framework for improving the efficiency and effectiveness of test suites generated from UML models. It focuses on three activities: transformation of Activity Diagram (AD) model into Colored Petri Net (CPN) model, generation and evaluation of AD based test suite and optimization of AD based test suite. Unified Modeling Language (UML) is a de facto standard for software system analysis and design. UML models can be categorized into structural and behavioral models. AD is a behavioral type of UML model and since major revision in UML version 2.x it has a new Petri Nets like semantics. It has wide application scope including embedded, workflow and web-service systems. For this reason this thesis concentrates on AD models. Informal semantics of UML generally and AD specially is a major challenge in the development of UML based verification and validation tools. One solution to this challenge is transforming a UML model into an executable formal model. In the thesis, a three step transformation methodology is proposed for resolving ambiguities in an AD model and then transforming it into a CPN representation which is a well known formal language with extensive tool support. Test case generation is one of the most critical and labor intensive activities in testing processes. The flow oriented semantic of AD suits modeling both sequential and concurrent systems. The thesis presented a novel technique to generate test cases from AD using a stochastic algorithm. In order to determine if the generated test suite is adequate, two test suite adequacy analysis techniques based on structural coverage and mutation have been proposed. In terms of structural coverage, two separate coverage criteria are also proposed to evaluate the adequacy of the test suite from both perspectives, sequential and concurrent. Mutation analysis is a fault-based technique to determine if the test suite is adequate for detecting particular types of faults. Four categories of mutation operators are defined to seed specific faults into the mutant model. Another focus of thesis is to improve the test suite efficiency without compromising its effectiveness. One way of achieving this is identifying and removing the redundant test cases. It has been shown that the test suite minimization by removing redundant test cases is a combinatorial optimization problem. An evolutionary computation based test suite minimization technique is developed to address the test suite minimization problem and its performance is empirically compared with other well known heuristic algorithms. Additionally, statistical analysis is performed to characterize the fitness landscape of test suite minimization problems. The proposed test suite minimization solution is extended to include multi-objective minimization. As the redundancy is contextual, different criteria and their combination can significantly change the solution test suite. Therefore, the last part of the thesis describes an investigation into multi-objective test suite minimization and optimization algorithms. The proposed framework is demonstrated and evaluated using prototype tools and case study models. Empirical results have shown that the techniques developed within the framework are effective in model based test suite generation and optimizatio

Using memetic algorithm for robustness testing of contract-based software models

Graph Transformation System (GTS) can formally specify the behavioral aspects of complex systems through graph-based contracts. Test suite generation under normal conditions from GTS specifications is a task well-suited to evolutionary algorithms such as Genetic and Particle Swarm Optimization (PSO) metaheuristics. However, testing the vulnerabilities of a system under unexpected events such as invalid inputs is essential. Furthermore, the mentioned global search algorithms tend to make big jumps in the system’s state-space that are not concentrated on particular test goals. In this paper, we extend the HGAPSO approach into a cost-aware Memetic Algorithm (MA) by making small local changes through a proposed local search operator to optimize coverage score and testing costs. Moreover, we test GTS specifications not only under normal events but also under unexpected situations. So, three coverage-based testing strategies are investigated, including normal testing, robustness testing, and a hybrid strategy. The effectiveness of the proposed test generation algorithm and the testing strategies are evaluated through a type of mutation analysis at the model-level. Our experimental results show that (1) the hybrid testing strategy outperforms normal and robustness testing strategies in terms of fault-detection capability, (2) the robustness testing is the most cost-efficient strategy, and (3) the proposed MA with the hybrid testing strategy outperforms the state-of-the-art global search algorithms

Using formal methods to support testing

Formal methods and testing are two important approaches that assist in the development of high quality software. While traditionally these approaches have been seen as rivals, in recent years a new consensus has developed in which they are seen as complementary. This article reviews the state of the art regarding ways in which the presence of a formal specification can be used to assist testing