The interplay of microscopic and mesoscopic structure in complex networks

Not all nodes in a network are created equal. Differences and similarities exist at both individual node and group levels. Disentangling single node from group properties is crucial for network modeling and structural inference. Based on unbiased generative probabilistic exponential random graph models and employing distributive message passing techniques, we present an efficient algorithm that allows one to separate the contributions of individual nodes and groups of nodes to the network structure. This leads to improved detection accuracy of latent class structure in real world data sets compared to models that focus on group structure alone. Furthermore, the inclusion of hitherto neglected group specific effects in models used to assess the statistical significance of small subgraph (motif) distributions in networks may be sufficient to explain most of the observed statistics. We show the predictive power of such generative models in forecasting putative gene-disease associations in the Online Mendelian Inheritance in Man (OMIM) database. The approach is suitable for both directed and undirected uni-partite as well as for bipartite networks

On the Stability of Community Detection Algorithms on Longitudinal Citation Data

There are fundamental differences between citation networks and other classes of graphs. In particular, given that citation networks are directed and acyclic, methods developed primarily for use with undirected social network data may face obstacles. This is particularly true for the dynamic development of community structure in citation networks. Namely, it is neither clear when it is appropriate to employ existing community detection approaches nor is it clear how to choose among existing approaches. Using simulated data, we attempt to clarify the conditions under which one should use existing methods and which of these algorithms is appropriate in a given context. We hope this paper will serve as both a useful guidepost and an encouragement to those interested in the development of more targeted approaches for use with longitudinal citation data.Comment: 17 pages, 7 figures, presenting at Applications of Social Network Analysis 2009, ETH Zurich Edit, August 17, 2009: updated abstract, figures, text clarification

Assortativity and leadership emergence from anti-preferential attachment in heterogeneous networks

Many real-world networks exhibit degree-assortativity, with nodes of similar degree more likely to link to one another. Particularly in social networks, the contribution to the total assortativity varies with degree, featuring a distinctive peak slightly past the average degree. The way traditional models imprint assortativity on top of pre-defined topologies is via degree-preserving link permutations, which however destroy the particular graph's hierarchical traits of clustering. Here, we propose the first generative model which creates heterogeneous networks with scale-free-like properties and tunable realistic assortativity. In our approach, two distinct populations of nodes are added to an initial network seed: one (the followers) that abides by usual preferential rules, and one (the potential leaders) connecting via anti-preferential attachments, i.e. selecting lower degree nodes for their initial links. The latter nodes come to develop a higher average degree, and convert eventually into the final hubs. Examining the evolution of links in Facebook, we present empirical validation for the connection between the initial anti-preferential attachment and long term high degree. Thus, our work sheds new light on the structure and evolution of social networks