1,046 research outputs found
Multiplicative Multiresolution Decomposition for Lossless Volumetric Medical Images Compression
With the emergence of medical imaging, the compression of volumetric medical images is essential. For this purpose, we propose a novel Multiplicative Multiresolution Decomposition (MMD) wavelet coding scheme for lossless compression of volumetric medical images. The MMD is used in speckle reduction technique but offers some proprieties which can be exploited in compression. Thus, as the wavelet transform the MMD provides a hierarchical representation and offers a possibility to realize lossless compression. We integrate in proposed scheme an inter slice filter based on wavelet transform and motion compensation to reduce data energy efficiently. We compare lossless results of classical wavelet coders such as 3D SPIHT and JP3D to the proposed scheme. This scheme incorporates MMD in lossless compression technique by applying MMD/wavelet or MMD transform to each slice, after inter slice filter is employed and the resulting sub-bands are coded by the 3D zero-tree algorithm SPIHT. Lossless experimental results show that the proposed scheme with the MMD can achieve lowest bit rates compared to 3D SPIHT and JP3D
3D Medical Image Lossless Compressor Using Deep Learning Approaches
The ever-increasing importance of accelerated information processing, communica-tion, and storing are major requirements within the big-data era revolution. With the extensive rise in data availability, handy information acquisition, and growing data rate, a critical challenge emerges in efficient handling. Even with advanced technical hardware developments and multiple Graphics Processing Units (GPUs) availability, this demand is still highly promoted to utilise these technologies effectively. Health-care systems are one of the domains yielding explosive data growth. Especially when considering their modern scanners abilities, which annually produce higher-resolution and more densely sampled medical images, with increasing requirements for massive storage capacity. The bottleneck in data transmission and storage would essentially be handled with an effective compression method. Since medical information is critical and imposes an influential role in diagnosis accuracy, it is strongly encouraged to guarantee exact reconstruction with no loss in quality, which is the main objective of any lossless compression algorithm. Given the revolutionary impact of Deep Learning (DL) methods in solving many tasks while achieving the state of the art results, includ-ing data compression, this opens tremendous opportunities for contributions. While considerable efforts have been made to address lossy performance using learning-based approaches, less attention was paid to address lossless compression. This PhD thesis investigates and proposes novel learning-based approaches for compressing 3D medical images losslessly.Firstly, we formulate the lossless compression task as a supervised sequential prediction problem, whereby a model learns a projection function to predict a target voxel given sequence of samples from its spatially surrounding voxels. Using such 3D local sampling information efficiently exploits spatial similarities and redundancies in a volumetric medical context by utilising such a prediction paradigm. The proposed NN-based data predictor is trained to minimise the differences with the original data values while the residual errors are encoded using arithmetic coding to allow lossless reconstruction.Following this, we explore the effectiveness of Recurrent Neural Networks (RNNs) as a 3D predictor for learning the mapping function from the spatial medical domain (16 bit-depths). We analyse Long Short-Term Memory (LSTM) models’ generalisabil-ity and robustness in capturing the 3D spatial dependencies of a voxel’s neighbourhood while utilising samples taken from various scanning settings. We evaluate our proposed MedZip models in compressing unseen Computerized Tomography (CT) and Magnetic Resonance Imaging (MRI) modalities losslessly, compared to other state-of-the-art lossless compression standards.This work investigates input configurations and sampling schemes for a many-to-one sequence prediction model, specifically for compressing 3D medical images (16 bit-depths) losslessly. The main objective is to determine the optimal practice for enabling the proposed LSTM model to achieve a high compression ratio and fast encoding-decoding performance. A solution for a non-deterministic environments problem was also proposed, allowing models to run in parallel form without much compression performance drop. Compared to well-known lossless codecs, experimental evaluations were carried out on datasets acquired by different hospitals, representing different body segments, and have distinct scanning modalities (i.e. CT and MRI).To conclude, we present a novel data-driven sampling scheme utilising weighted gradient scores for training LSTM prediction-based models. The objective is to determine whether some training samples are significantly more informative than others, specifically in medical domains where samples are available on a scale of billions. The effectiveness of models trained on the presented importance sampling scheme was evaluated compared to alternative strategies such as uniform, Gaussian, and sliced-based sampling
JP3D compression of solar data-cubes: photospheric imaging and spectropolarimetry
Hyperspectral imaging is an ubiquitous technique in solar physics
observations and the recent advances in solar instrumentation enabled us to
acquire and record data at an unprecedented rate. The huge amount of data which
will be archived in the upcoming solar observatories press us to compress the
data in order to reduce the storage space and transfer times. The correlation
present over all dimensions, spatial, temporal and spectral, of solar data-sets
suggests the use of a 3D base wavelet decomposition, to achieve higher
compression rates. In this work, we evaluate the performance of the recent
JPEG2000 Part 10 standard, known as JP3D, for the lossless compression of
several types of solar data-cubes. We explore the differences in: a) The
compressibility of broad-band or narrow-band time-sequence; I or V stokes
profiles in spectropolarimetric data-sets; b) Compressing data in
[x,y,] packages at different times or data in [x,y,t] packages of
different wavelength; c) Compressing a single large data-cube or several
smaller data-cubes; d) Compressing data which is under-sampled or super-sampled
with respect to the diffraction cut-off
Contributions to HEVC Prediction for Medical Image Compression
Medical imaging technology and applications are continuously evolving, dealing with images
of increasing spatial and temporal resolutions, which allow easier and more accurate
medical diagnosis. However, this increase in resolution demands a growing amount of
data to be stored and transmitted. Despite the high coding efficiency achieved by the
most recent image and video coding standards in lossy compression, they are not well
suited for quality-critical medical image compression where either near-lossless or lossless
coding is required.
In this dissertation, two different approaches to improve lossless coding of volumetric
medical images, such as Magnetic Resonance and Computed Tomography, were studied
and implemented using the latest standard High Efficiency Video Encoder (HEVC). In a
first approach, the use of geometric transformations to perform inter-slice prediction was
investigated.
For the second approach, a pixel-wise prediction technique, based on Least-Squares prediction,
that exploits inter-slice redundancy was proposed to extend the current HEVC
lossless tools. Experimental results show a bitrate reduction between 45% and 49%, when
compared with DICOM recommended encoders, and 13.7% when compared with standard
HEVC
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