Local convexity inspired low-complexity non-coherent signal detector for nano-scale molecular communications

Molecular communications via diffusion (MCvD) represents a relatively new area of wireless data transfer with especially attractive characteristics for nanoscale applications. Due to the nature of diffusive propagation, one of the key challenges is to mitigate inter-symbol interference (ISI) that results from the long tail of channel response. Traditional coherent detectors rely on accurate channel estimations and incur a high computational complexity. Both of these constraints make coherent detection unrealistic for MCvD systems. In this paper, we propose a low-complexity and noncoherent signal detector, which exploits essentially the local convexity of the diffusive channel response. A threshold estimation mechanism is proposed to detect signals blindly, which can also adapt to channel variations. Compared to other noncoherent detectors, the proposed algorithm is capable of operating at high data rates and suppressing ISI from a large number of previous symbols. Numerical results demonstrate that not only is the ISI effectively suppressed, but the complexity is also reduced by only requiring summation operations. As a result, the proposed noncoherent scheme will provide the necessary potential to low-complexity molecular communications, especially for nanoscale applications with a limited computation and energy budget

Transmitter and Receiver Architectures for Molecular Communications: A Survey on Physical Design with Modulation, Coding, and Detection Techniques

Inspired by nature, molecular communications (MC), i.e., the use of molecules to encode, transmit, and receive information, stands as the most promising communication paradigm to realize the nanonetworks. Even though there has been extensive theoretical research toward nanoscale MC, there are no examples of implemented nanoscale MC networks. The main reason for this lies in the peculiarities of nanoscale physics, challenges in nanoscale fabrication, and highly stochastic nature of the biochemical domain of envisioned nanonetwork applications. This mandates developing novel device architectures and communication methods compatible with MC constraints. To that end, various transmitter and receiver designs for MC have been proposed in the literature together with numerable modulation, coding, and detection techniques. However, these works fall into domains of a very wide spectrum of disciplines, including, but not limited to, information and communication theory, quantum physics, materials science, nanofabrication, physiology, and synthetic biology. Therefore, we believe it is imperative for the progress of the field that an organized exposition of cumulative knowledge on the subject matter can be compiled. Thus, to fill this gap, in this comprehensive survey, we review the existing literature on transmitter and receiver architectures toward realizing MC among nanomaterial-based nanomachines and/or biological entities and provide a complete overview of modulation, coding, and detection techniques employed for MC. Moreover, we identify the most significant shortcomings and challenges in all these research areas and propose potential solutions to overcome some of them.This work was supported in part by the European Research Council (ERC) Projects MINERVA under Grant ERC-2013-CoG #616922 and MINERGRACE under Grant ERC-2017-PoC #780645

Diffusive MIMO Molecular Communications: Channel Estimation, Equalization and Detection

In diffusion-based communication, as for molecular systems, the achievable data rate is low due to the stochastic nature of diffusion which exhibits a severe inter-symbol-interference (ISI). Multiple-Input Multiple-Output (MIMO) multiplexing improves the data rate at the expense of an inter-link interference (ILI). This paper investigates training-based channel estimation schemes for diffusive MIMO (D-MIMO) systems and corresponding equalization methods. Maximum likelihood and least-squares estimators of mean channel are derived, and the training sequence is designed to minimize the mean square error (MSE). Numerical validations in terms of MSE are compared with Cramer-Rao bound derived herein. Equalization is based on decision feedback equalizer (DFE) structure as this is effective in mitigating diffusive ISI/ILI. Zero-forcing, minimum MSE and least-squares criteria have been paired to DFE, and their performances are evaluated in terms of bit error probability. Since D-MIMO systems are severely affected by the ILI because of short transmitters inter-distance, D-MIMO time interleaving is exploited as countermeasure to mitigate the ILI with remarkable performance improvements. The feasibility of a block-type communication including training and data equalization is explored for D-MIMO, and system-level performances are numerically derived.Comment: Accepted paper at IEEE transaction on Communicatio

High-dimensional metric combining for non-coherent molecular signal detection

In emerging Internet-of-Nano-Thing (IoNT), information will be embedded and conveyed in the form of molecules through complex and diffusive medias. One main challenge lies in the long-tail nature of the channel response causing inter-symbolinterference (ISI), which deteriorates the detection performance. If the channel is unknown, existing coherent schemes (e.g., the state-of-the-art maximum a posteriori, MAP) have to pursue complex channel estimation and ISI mitigation techniques, which will result in either high computational complexity, or poor estimation accuracy that will hinder the detection performance. In this paper, we develop a novel high-dimensional non-coherent detection scheme for molecular signals. We achieve this in a higher-dimensional metric space by combining different noncoherent metrics that exploit the transient features of the signals. By deducing the theoretical bit error rate (BER) for any constructed high-dimensional non-coherent metric, we prove that, higher dimensionality always achieves a lower BER in the same sample space, at the expense of higher complexity on computing the multivariate posterior densities. The realization of this high-dimensional non-coherent scheme is resorting to the Parzen window technique based probabilistic neural network (Parzen-PNN), given its ability to approximate the multivariate posterior densities by taking the previous detection results into a channel-independent Gaussian Parzen window, thereby avoiding the complex channel estimations. The complexity of the posterior computation is shared by the parallel implementation of the Parzen-PNN. Numerical simulations demonstrate that our proposed scheme can gain 10dB in SNR given a fixed BER as 10-4, in comparison with other state-of-the-art methods

Anti-ISI Demodulation Scheme and Its Experiment-based Evaluation for Diffusion-based Molecular Communication

In diffusion-based molecular communication (MC), the most common modulation technique is based on the concentration of information molecules. However, the random delay of molecules due to the channel with memory causes severe inter-symbol interference (ISI) among consecutive signals. In this paper, we propose a detection technique for demodulating signals, the increase detection algorithm (IDA), to improve the reliability of concentration-encoded diffusion-based molecular communication. The proposed IDA detects an increase (i.e., a relative concentration value) in molecule concentration to extract the information instead of detecting an absolute concentration value. To validate the availability of IDA, we establish a real physical tabletop testbed. And we evaluate the proposed demodulation technique using bit error rate (BER) and demonstrate by the tabletop molecular communication platform that the proposed IDA successfully minimizes and even isolates ISI so that a lower BER is achieved than the common demodulation technique

Nano/Bio-Receiver Architectures and Detection Methods for Molecular Communications

Internet of Nano Things (IoNT) is an emerging technology, which aims at extending the connectivity into nanoscale and biological environments with collaborative networks of artificial nanomachines and biological entities integrated into the Internet. To enable the IoNT and its groundbreaking applications, such as real-time intrabody health monitoring, it is imperative to devise nanoscale communication techniques with low-complexity transceiver architectures. Bio-inspired molecular communications (MC), which uses molecules to transfer information, is the most promising technique to realise IoNT due to its inherent biocompatibility and reliability in physiologically-relevant environments. Despite the substantial body of work concerning MC, the implications of an interface between MC channel and practical MC transceiver architectures are largely neglected, leading to a major gap between theory and practice. As the first step to remove this discrepancy, in this thesis, I develop a realistic analytical ICT model for microfluidic MC with surface-based receivers as a convection-diffusion-reaction system. In the second part, I focus on biological MC receivers, which can be implemented in living cells using synthetic biology tools. In this direction, I theoretically develop low-complexity and reliable MC detection methods exploiting the various statistics of the stochastic ligand-receptor interactions at the membrane of biological MC receivers. The estimation and detection theoretical analysis of these detection methods demonstrate that even single type of receptors can provide sufficient statistics to overcome the receptor saturation problem, cope with the interference of non-cognate molecules, and simultaneously sense the concentration of multiple types of ligands. I also propose synthetic receptor designs for the transduction of decision statistics into a representation by concentration of intracellular molecules, and design chemical reaction networks performing decoding with intracellular reactions. Finally, I fabricate a micro/nanoscale MC receiver based on graphene field-effect transistor biosensors and perform its ICT characterisation in a custom-designed microfluidic MC system with the information encoded into the concentration of DNAs. This experimental platform is the first practical demonstration of micro/nanoscale MC, and can serve as a testbed for developing realistic MC methods

Adaptive detection and ISI mitigation for mobile molecular communication

Current studies on modulation and detection schemes in molecular communication mainly focus on the scenarios with static transmitters and receivers. However, mobile molecular communication is needed in many envisioned applications, such as target tracking and drug delivery. Until now, investigations about mobile molecular communication have been limited. In this paper, a static transmitter and a mobile bacterium-based receiver performing random walk are considered. In this mobile scenario, the channel impulse response changes due to the dynamic change of the distance between the transmitter and the receiver. Detection schemes based on fixed distance fail in signal detection in such a scenario. Furthermore, the intersymbol interference (ISI) effect becomes more complex due to the dynamic character of the signal which makes the estimation and mitigation of the ISI even more difficult. In this paper, an adaptive ISI mitigation method and two adaptive detection schemes are proposed for this mobile scenario. In the proposed scheme, adaptive ISI mitigation, estimation of dynamic distance and the corresponding impulse response reconstruction are performed in each symbol interval. Based on the dynamic channel impulse response in each interval, two adaptive detection schemes, concentration-based adaptive threshold detection (CATD) and peak-time-based adaptive detection (PAD), are proposed for signal detection. Simulations demonstrate that, the ISI effect is significantly reduced and the adaptive detection schemes are reliable and robust for mobile molecular communication

A Survey on Modulation Techniques in Molecular Communication via Diffusion

This survey paper focuses on modulation aspects of molecular communication, an emerging field focused on building biologically-inspired systems that embed data within chemical signals. The primary challenges in designing these systems are how to encode and modulate information onto chemical signals, and how to design a receiver that can detect and decode the information from the corrupted chemical signal observed at the destination. In this paper, we focus on modulation design for molecular communication via diffusion systems. In these systems, chemical signals are transported using diffusion, possibly assisted by flow, from the transmitter to the receiver. This tutorial presents recent advancements in modulation and demodulation schemes for molecular communication via diffusion. We compare five different modulation types: concentration-based, type-based, timing-based, spatial, and higher-order modulation techniques. The end-to-end system designs for each modulation scheme are presented. In addition, the key metrics used in the literature to evaluate the performance of these techniques are also presented. Finally, we provide a numerical bit error rate comparison of prominent modulation techniques using analytical models. We close the tutorial with a discussion of key open issues and future research directions for design of molecular communication via diffusion systems.Comment: Preprint of the accepted manuscript for publication in IEEE Surveys and Tutorial