A Survey on Metric Learning for Feature Vectors and Structured Data

The need for appropriate ways to measure the distance or similarity between data is ubiquitous in machine learning, pattern recognition and data mining, but handcrafting such good metrics for specific problems is generally difficult. This has led to the emergence of metric learning, which aims at automatically learning a metric from data and has attracted a lot of interest in machine learning and related fields for the past ten years. This survey paper proposes a systematic review of the metric learning literature, highlighting the pros and cons of each approach. We pay particular attention to Mahalanobis distance metric learning, a well-studied and successful framework, but additionally present a wide range of methods that have recently emerged as powerful alternatives, including nonlinear metric learning, similarity learning and local metric learning. Recent trends and extensions, such as semi-supervised metric learning, metric learning for histogram data and the derivation of generalization guarantees, are also covered. Finally, this survey addresses metric learning for structured data, in particular edit distance learning, and attempts to give an overview of the remaining challenges in metric learning for the years to come.Comment: Technical report, 59 pages. Changes in v2: fixed typos and improved presentation. Changes in v3: fixed typos. Changes in v4: fixed typos and new method

Efficient Online String Matching through Linked Weak Factors

Online string matching is a computational problem involving the search for patterns or substrings in a large text dataset, with the pattern and text being processed sequentially, without prior access to the entire text. Its relevance stems from applications in data compression, data mining, text editing, and bioinformatics, where rapid and efficient pattern matching is crucial. Various solutions have been proposed over the past few decades, employing diverse techniques. Recently, weak recognition approaches have attracted increasing attention. This paper presents Hash Chain, a new algorithm based on a robust weak factor recognition approach that connects adjacent factors through hashing. Despite its O(nm) complexity, the algorithm exhibits a sublinear behavior in practice and achieves superior performance compared to the most effective algorithms

One-Tape Turing Machine Variants and Language Recognition

We present two restricted versions of one-tape Turing machines. Both characterize the class of context-free languages. In the first version, proposed by Hibbard in 1967 and called limited automata, each tape cell can be rewritten only in the first $d$ visits, for a fixed constant $d\geq 2$. Furthermore, for $d=2$ deterministic limited automata are equivalent to deterministic pushdown automata, namely they characterize deterministic context-free languages. Further restricting the possible operations, we consider strongly limited automata. These models still characterize context-free languages. However, the deterministic version is less powerful than the deterministic version of limited automata. In fact, there exist deterministic context-free languages that are not accepted by any deterministic strongly limited automaton.Comment: 20 pages. This article will appear in the Complexity Theory Column of the September 2015 issue of SIGACT New

Random Access to Grammar Compressed Strings

Grammar based compression, where one replaces a long string by a small context-free grammar that generates the string, is a simple and powerful paradigm that captures many popular compression schemes. In this paper, we present a novel grammar representation that allows efficient random access to any character or substring without decompressing the string. Let $S$ be a string of length $N$ compressed into a context-free grammar $\mathcal{S}$ of size $n$. We present two representations of $\mathcal{S}$ achieving $O(\log N)$ random access time, and either $O(n\cdot \alpha_k(n))$ construction time and space on the pointer machine model, or $O(n)$ construction time and space on the RAM. Here, $\alpha_k(n)$ is the inverse of the $k^{th}$ row of Ackermann's function. Our representations also efficiently support decompression of any substring in $S$: we can decompress any substring of length $m$ in the same complexity as a single random access query and additional $O(m)$ time. Combining these results with fast algorithms for uncompressed approximate string matching leads to several efficient algorithms for approximate string matching on grammar-compressed strings without decompression. For instance, we can find all approximate occurrences of a pattern $P$ with at most $k$ errors in time $O(n(\min\{|P|k, k^4 + |P|\} + \log N) + occ)$, where $occ$ is the number of occurrences of $P$ in $S$. Finally, we generalize our results to navigation and other operations on grammar-compressed ordered trees. All of the above bounds significantly improve the currently best known results. To achieve these bounds, we introduce several new techniques and data structures of independent interest, including a predecessor data structure, two "biased" weighted ancestor data structures, and a compact representation of heavy paths in grammars.Comment: Preliminary version in SODA 201