3,896 research outputs found
Using Neural Networks for Relation Extraction from Biomedical Literature
Using different sources of information to support automated extracting of
relations between biomedical concepts contributes to the development of our
understanding of biological systems. The primary comprehensive source of these
relations is biomedical literature. Several relation extraction approaches have
been proposed to identify relations between concepts in biomedical literature,
namely, using neural networks algorithms. The use of multichannel architectures
composed of multiple data representations, as in deep neural networks, is
leading to state-of-the-art results. The right combination of data
representations can eventually lead us to even higher evaluation scores in
relation extraction tasks. Thus, biomedical ontologies play a fundamental role
by providing semantic and ancestry information about an entity. The
incorporation of biomedical ontologies has already been proved to enhance
previous state-of-the-art results.Comment: Artificial Neural Networks book (Springer) - Chapter 1
Knowledge will Propel Machine Understanding of Content: Extrapolating from Current Examples
Machine Learning has been a big success story during the AI resurgence. One
particular stand out success relates to learning from a massive amount of data.
In spite of early assertions of the unreasonable effectiveness of data, there
is increasing recognition for utilizing knowledge whenever it is available or
can be created purposefully. In this paper, we discuss the indispensable role
of knowledge for deeper understanding of content where (i) large amounts of
training data are unavailable, (ii) the objects to be recognized are complex,
(e.g., implicit entities and highly subjective content), and (iii) applications
need to use complementary or related data in multiple modalities/media. What
brings us to the cusp of rapid progress is our ability to (a) create relevant
and reliable knowledge and (b) carefully exploit knowledge to enhance ML/NLP
techniques. Using diverse examples, we seek to foretell unprecedented progress
in our ability for deeper understanding and exploitation of multimodal data and
continued incorporation of knowledge in learning techniques.Comment: Pre-print of the paper accepted at 2017 IEEE/WIC/ACM International
Conference on Web Intelligence (WI). arXiv admin note: substantial text
overlap with arXiv:1610.0770
The Knowledge Level in Cognitive Architectures: Current Limitations and Possible Developments
In this paper we identify and characterize an analysis of two problematic aspects affecting the representational level of cognitive architectures (CAs), namely: the limited size and the homogeneous typology of the encoded and processed knowledge.
We argue that such aspects may constitute not only a technological problem that, in our opinion, should be addressed in order to build articial agents able to exhibit intelligent behaviours in general scenarios, but also an epistemological one, since they limit the plausibility of the comparison of the CAs' knowledge representation and processing mechanisms with those executed by humans in their everyday activities. In the final part of the paper further directions of research will be explored, trying to address current limitations and
future challenges
Classifying Relations using Recurrent Neural Network with Ontological-Concept Embedding
Relation extraction and classification represents a fundamental and challenging aspect of Natural Language Processing (NLP) research which depends on other tasks such as entity detection and word sense disambiguation. Traditional relation extraction methods based on pattern-matching using regular expressions grammars and lexico-syntactic pattern rules suffer from several drawbacks including the labor involved in handcrafting and maintaining large number of rules that are difficult to reuse. Current research has focused on using Neural Networks to help improve the accuracy of relation extraction tasks using a specific type of Recurrent Neural Network (RNN). A promising approach for relation classification uses an RNN that incorporates an ontology-based concept embedding layer in addition to word embeddings. This dissertation presents several improvements to this approach by addressing its main limitations. First, several different types of semantic relationships between concepts are incorporated into the model; prior work has only considered is-a hierarchical relationships. Secondly, a significantly larger vocabulary of concepts is used. Thirdly, an improved method for concept matching was devised. The results of adding these improvements to two state-of-the-art baseline models demonstrated an improvement to accuracy when evaluated on benchmark data used in prior studies
Towards Semantically Enriched Embeddings for Knowledge Graph Completion
Embedding based Knowledge Graph (KG) Completion has gained much attention
over the past few years. Most of the current algorithms consider a KG as a
multidirectional labeled graph and lack the ability to capture the semantics
underlying the schematic information. In a separate development, a vast amount
of information has been captured within the Large Language Models (LLMs) which
has revolutionized the field of Artificial Intelligence. KGs could benefit from
these LLMs and vice versa. This vision paper discusses the existing algorithms
for KG completion based on the variations for generating KG embeddings. It
starts with discussing various KG completion algorithms such as transductive
and inductive link prediction and entity type prediction algorithms. It then
moves on to the algorithms utilizing type information within the KGs, LLMs, and
finally to algorithms capturing the semantics represented in different
description logic axioms. We conclude the paper with a critical reflection on
the current state of work in the community and give recommendations for future
directions
Supervised Typing of Big Graphs using Semantic Embeddings
We propose a supervised algorithm for generating type embeddings in the same
semantic vector space as a given set of entity embeddings. The algorithm is
agnostic to the derivation of the underlying entity embeddings. It does not
require any manual feature engineering, generalizes well to hundreds of types
and achieves near-linear scaling on Big Graphs containing many millions of
triples and instances by virtue of an incremental execution. We demonstrate the
utility of the embeddings on a type recommendation task, outperforming a
non-parametric feature-agnostic baseline while achieving 15x speedup and
near-constant memory usage on a full partition of DBpedia. Using
state-of-the-art visualization, we illustrate the agreement of our
extensionally derived DBpedia type embeddings with the manually curated domain
ontology. Finally, we use the embeddings to probabilistically cluster about 4
million DBpedia instances into 415 types in the DBpedia ontology.Comment: 6 pages, to be published in Semantic Big Data Workshop at ACM, SIGMOD
2017; extended version in preparation for Open Journal of Semantic Web (OJSW
Biomedical ontology alignment: An approach based on representation learning
While representation learning techniques have shown great promise in application to a number of different NLP tasks, they have had little impact on the problem of ontology matching. Unlike past work that has focused on feature engineering, we present a novel representation learning approach that is tailored to the ontology matching task. Our approach is based on embedding ontological terms in a high-dimensional Euclidean space. This embedding is derived on the basis of a novel phrase retrofitting strategy through which semantic similarity information becomes inscribed onto fields of pre-trained word vectors. The resulting framework also incorporates a novel outlier detection mechanism based on a denoising autoencoder that is shown to improve performance. An ontology matching system derived using the proposed framework achieved an F-score of 94% on an alignment scenario involving the Adult Mouse Anatomical Dictionary and the Foundational Model of Anatomy ontology (FMA) as targets. This compares favorably with the best performing systems on the Ontology Alignment Evaluation Initiative anatomy challenge. We performed additional experiments on aligning FMA to NCI Thesaurus and to SNOMED CT based on a reference alignment extracted from the UMLS Metathesaurus. Our system obtained overall F-scores of 93.2% and 89.2% for these experiments, thus achieving state-of-the-art results
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