Retinal vessel segmentation using textons

Segmenting vessels from retinal images, like segmentation in many other medical image domains, is a challenging task, as there is no unified way that can be adopted to extract the vessels accurately. However, it is the most critical stage in automatic assessment of various forms of diseases (e.g. Glaucoma, Age-related macular degeneration, diabetic retinopathy and cardiovascular diseases etc.). Our research aims to investigate retinal image segmentation approaches based on textons as they provide a compact description of texture that can be learnt from a training set. This thesis presents a brief review of those diseases and also includes their current situations, future trends and techniques used for their automatic diagnosis in routine clinical applications. The importance of retinal vessel segmentation is particularly emphasized in such applications. An extensive review of previous work on retinal vessel segmentation and salient texture analysis methods is presented. Five automatic retinal vessel segmentation methods are proposed in this thesis. The first method focuses on addressing the problem of removing pathological anomalies (Drusen, exudates) for retinal vessel segmentation, which have been identified by other researchers as a problem and a common source of error. The results show that the modified method shows some improvement compared to a previously published method. The second novel supervised segmentation method employs textons. We propose a new filter bank (MR11) that includes bar detectors for vascular feature extraction and other kernels to detect edges and photometric variations in the image. The k-means clustering algorithm is adopted for texton generation based on the vessel and non-vessel elements which are identified by ground truth. The third improved supervised method is developed based on the second one, in which textons are generated by k-means clustering and texton maps representing vessels are derived by back projecting pixel clusters onto hand labelled ground truth. A further step is implemented to ensure that the best combinations of textons are represented in the map and subsequently used to identify vessels in the test set. The experimental results on two benchmark datasets show that our proposed method performs well compared to other published work and the results of human experts. A further test of our system on an independent set of optical fundus images verified its consistent performance. The statistical analysis on experimental results also reveals that it is possible to train unified textons for retinal vessel segmentation. In the fourth method a novel scheme using Gabor filter bank for vessel feature extraction is proposed. The ii method is inspired by the human visual system. Machine learning is used to optimize the Gabor filter parameters. The experimental results demonstrate that our method significantly enhances the true positive rate while maintaining a level of specificity that is comparable with other approaches. Finally, we proposed a new unsupervised texton based retinal vessel segmentation method using derivative of SIFT and multi-scale Gabor filers. The lack of sufficient quantities of hand labelled ground truth and the high level of variability in ground truth labels amongst experts provides the motivation for this approach. The evaluation results reveal that our unsupervised segmentation method is comparable with the best other supervised methods and other best state of the art methods

Scene Segmentation and Object Classification for Place Recognition

This dissertation tries to solve the place recognition and loop closing problem in a way similar to human visual system. First, a novel image segmentation algorithm is developed. The image segmentation algorithm is based on a Perceptual Organization model, which allows the image segmentation algorithm to ‘perceive’ the special structural relations among the constituent parts of an unknown object and hence to group them together without object-specific knowledge. Then a new object recognition method is developed. Based on the fairly accurate segmentations generated by the image segmentation algorithm, an informative object description that includes not only the appearance (colors and textures), but also the parts layout and shape information is built. Then a novel feature selection algorithm is developed. The feature selection method can select a subset of features that best describes the characteristics of an object class. Classifiers trained with the selected features can classify objects with high accuracy. In next step, a subset of the salient objects in a scene is selected as landmark objects to label the place. The landmark objects are highly distinctive and widely visible. Each landmark object is represented by a list of SIFT descriptors extracted from the object surface. This object representation allows us to reliably recognize an object under certain viewpoint changes. To achieve efficient scene-matching, an indexing structure is developed. Both texture feature and color feature of objects are used as indexing features. The texture feature and the color feature are viewpoint-invariant and hence can be used to effectively find the candidate objects with similar surface characteristics to a query object. Experimental results show that the object-based place recognition and loop detection method can efficiently recognize a place in a large complex outdoor environment

Contour and texture for visual recognition of object categories

The recognition of categories of objects in images has become a central topic in computer vision. Automatic visual recognition systems are rapidly becoming central to applications such as image search, robotics, vehicle safety systems, and image editing. This work addresses three sub-problems of recognition: image classification, object detection, and semantic segmentation. The task of classification is to determine whether an object of a particular category is present or not. Object detection aims to localize any objects of the category. Semantic segmentation is a more complete image understanding, whereby an image is partitioned into coherent regions that are assigned meaningful class labels. This thesis proposes novel discriminative learning approaches to these problems. Our primary contributions are threefold. Firstly, we demonstrate that the contours (the outline and interior edges) of an object are, alone, sufficient for accurate visual recognition. Secondly, we propose two powerful new feature types: (i) a learned codebook of contour fragments matched with an improved oriented chamfer distance, and (ii) a set of texture-based features that simultaneously exploit local appearance, approximate shape, and appearance context. The efficacy of these new features types is evaluated on a wide variety of datasets. Thirdly, we show how, in combination, these two largely orthogonal feature types can substantially improve recognition performance above that achieved by either alone

Kernelized Supervised Dictionary Learning

The representation of a signal using a learned dictionary instead of predefined operators, such as wavelets, has led to state-of-the-art results in various applications such as denoising, texture analysis, and face recognition. The area of dictionary learning is closely associated with sparse representation, which means that the signal is represented using few atoms in the dictionary. Despite recent advances in the computation of a dictionary using fast algorithms such as K-SVD, online learning, and cyclic coordinate descent, which make the computation of a dictionary from millions of data samples computationally feasible, the dictionary is mainly computed using unsupervised approaches such as k-means. These approaches learn the dictionary by minimizing the reconstruction error without taking into account the category information, which is not optimal in classification tasks. In this thesis, we propose a supervised dictionary learning (SDL) approach by incorporating information on class labels into the learning of the dictionary. To this end, we propose to learn the dictionary in a space where the dependency between the signals and their corresponding labels is maximized. To maximize this dependency, the recently-introduced Hilbert Schmidt independence criterion (HSIC) is used. The learned dictionary is compact and has closed form; the proposed approach is fast. We show that it outperforms other unsupervised and supervised dictionary learning approaches in the literature on real-world data. Moreover, the proposed SDL approach has as its main advantage that it can be easily kernelized, particularly by incorporating a data-driven kernel such as a compression-based kernel, into the formulation. In this thesis, we propose a novel compression-based (dis)similarity measure. The proposed measure utilizes a 2D MPEG-1 encoder, which takes into consideration the spatial locality and connectivity of pixels in the images. The proposed formulation has been carefully designed based on MPEG encoder functionality. To this end, by design, it solely uses P-frame coding to find the (dis)similarity among patches/images. We show that the proposed measure works properly on both small and large patch sizes on textures. Experimental results show that by incorporating the proposed measure as a kernel into our SDL, it significantly improves the performance of a supervised pixel-based texture classification on Brodatz and outdoor images compared to other compression-based dissimilarity measures, as well as state-of-the-art SDL methods. It also improves the computation speed by about 40% compared to its closest rival. Eventually, we have extended the proposed SDL to multiview learning, where more than one representation is available on a dataset. We propose two different multiview approaches: one fusing the feature sets in the original space and then learning the dictionary and sparse coefficients on the fused set; and the other by learning one dictionary and the corresponding coefficients in each view separately, and then fusing the representations in the space of the dictionaries learned. We will show that the proposed multiview approaches benefit from the complementary information in multiple views, and investigate the relative performance of these approaches in the application of emotion recognition

Image Enhancement of X-ray Phase Contrast Images of Micro Objects

In x-ray based baggage scanning, the ability to identify small devices (e.g. detonator components) and explosives in baggage or shipped parcels relies on being able to characterize the materials and details that make up an x-ray image. Recently, an improvement over existing baggage scanning techniques has been proposed in the form of a system employing x-ray phase contrast imaging, as this was shown to detect smaller/fainter features and to be more sensitive to materials textures (small-scale inhomogeneites, etc). This paper deals with additional image processing performed on the phase contrast images produced by the above system, to further improve its potential. It uses textural analysis to enhance imaged micro-structures and devices, and it has been found to be able to provide a contrast increase of up to 300% on a series of images of a phantom mimicking the presence of an explosive device plus detonator components

What else does your biometric data reveal? A survey on soft biometrics

International audienceRecent research has explored the possibility of extracting ancillary information from primary biometric traits, viz., face, fingerprints, hand geometry and iris. This ancillary information includes personal attributes such as gender, age, ethnicity, hair color, height, weight, etc. Such attributes are known as soft biometrics and have applications in surveillance and indexing biometric databases. These attributes can be used in a fusion framework to improve the matching accuracy of a primary biometric system (e.g., fusing face with gender information), or can be used to generate qualitative descriptions of an individual (e.g., "young Asian female with dark eyes and brown hair"). The latter is particularly useful in bridging the semantic gap between human and machine descriptions of biometric data. In this paper, we provide an overview of soft biometrics and discuss some of the techniques that have been proposed to extract them from image and video data. We also introduce a taxonomy for organizing and classifying soft biometric attributes, and enumerate the strengths and limitations of these attributes in the context of an operational biometric system. Finally, we discuss open research problems in this field. This survey is intended for researchers and practitioners in the field of biometrics

Robust density modelling using the student's t-distribution for human action recognition

The extraction of human features from videos is often inaccurate and prone to outliers. Such outliers can severely affect density modelling when the Gaussian distribution is used as the model since it is highly sensitive to outliers. The Gaussian distribution is also often used as base component of graphical models for recognising human actions in the videos (hidden Markov model and others) and the presence of outliers can significantly affect the recognition accuracy. In contrast, the Student's t-distribution is more robust to outliers and can be exploited to improve the recognition rate in the presence of abnormal data. In this paper, we present an HMM which uses mixtures of t-distributions as observation probabilities and show how experiments over two well-known datasets (Weizmann, MuHAVi) reported a remarkable improvement in classification accuracy. © 2011 IEEE