Classifying sequences by the optimized dissimilarity space embedding approach: a case study on the solubility analysis of the E. coli proteome

We evaluate a version of the recently-proposed classification system named Optimized Dissimilarity Space Embedding (ODSE) that operates in the input space of sequences of generic objects. The ODSE system has been originally presented as a classification system for patterns represented as labeled graphs. However, since ODSE is founded on the dissimilarity space representation of the input data, the classifier can be easily adapted to any input domain where it is possible to define a meaningful dissimilarity measure. Here we demonstrate the effectiveness of the ODSE classifier for sequences by considering an application dealing with the recognition of the solubility degree of the Escherichia coli proteome. Solubility, or analogously aggregation propensity, is an important property of protein molecules, which is intimately related to the mechanisms underlying the chemico-physical process of folding. Each protein of our dataset is initially associated with a solubility degree and it is represented as a sequence of symbols, denoting the 20 amino acid residues. The herein obtained computational results, which we stress that have been achieved with no context-dependent tuning of the ODSE system, confirm the validity and generality of the ODSE-based approach for structured data classification.Comment: 10 pages, 49 reference

Prospects of a mathematical theory of human behavior in complex man-machine systems tasks

A hierarchy of human activities is derived by analyzing automobile driving in general terms. A structural description leads to a block diagram and a time-sharing computer analogy. The range of applicability of existing mathematical models is considered with respect to the hierarchy of human activities in actual complex tasks. Other mathematical tools so far not often applied to man machine systems are also discussed. The mathematical descriptions at least briefly considered here include utility, estimation, control, queueing, and fuzzy set theory as well as artificial intelligence techniques. Some thoughts are given as to how these methods might be integrated and how further work might be pursued

Land cover classification using fuzzy rules and aggregation of contextual information through evidence theory

Land cover classification using multispectral satellite image is a very challenging task with numerous practical applications. We propose a multi-stage classifier that involves fuzzy rule extraction from the training data and then generation of a possibilistic label vector for each pixel using the fuzzy rule base. To exploit the spatial correlation of land cover types we propose four different information aggregation methods which use the possibilistic class label of a pixel and those of its eight spatial neighbors for making the final classification decision. Three of the aggregation methods use Dempster-Shafer theory of evidence while the remaining one is modeled after the fuzzy k-NN rule. The proposed methods are tested with two benchmark seven channel satellite images and the results are found to be quite satisfactory. They are also compared with a Markov random field (MRF) model-based contextual classification method and found to perform consistently better.Comment: 14 pages, 2 figure

A document management methodology based on similarity contents

The advent of the WWW and distributed information systems have made it possible to share documents between different users and organisations. However, this has created many problems related to the security, accessibility, right and most importantly the consistency of documents. It is important that the people involved in the documents management process have access to the most up-to-date version of documents, retrieve the correct documents and should be able to update the documents repository in such a way that his or her document are known to others. In this paper we propose a method for organising, storing and retrieving documents based on similarity contents. The method uses techniques based on information retrieval, document indexation and term extraction and indexing. This methodology is developed for the E-Cognos project which aims at developing tools for the management and sharing of documents in the construction domain

Graph ambiguity

In this paper, we propose a rigorous way to define the concept of ambiguity in the domain of graphs. In past studies, the classical definition of ambiguity has been derived starting from fuzzy set and fuzzy information theories. Our aim is to show that also in the domain of the graphs it is possible to derive a formulation able to capture the same semantic and mathematical concept. To strengthen the theoretical results, we discuss the application of the graph ambiguity concept to the graph classification setting, conceiving a new kind of inexact graph matching procedure. The results prove that the graph ambiguity concept is a characterizing and discriminative property of graphs. (C) 2013 Elsevier B.V. All rights reserved

Motorized cart

Motorized cart is known as an effective tool and timeless that help people carry heavy loads. For farmers, it has an especially vital tool for moving goods. Oil palm farmers typically uses the wheelbarrow to move the oil palm fruit (Figure 10.1). However, there is a lack of equipment that should be further enhanced in capabilities. Motorized carts that seek to add automation to wheelbarrow as it is to help people save manpower while using it. At present, oil palm plantation industry is among the largest in Malaysia. However, in an effort to increase the prestige of the industry to a higher level there are challenges to be faced. Shortage of workers willing to work the farm for harvesting oil palm has given pain to manage oil palm plantations. Many have complained about the difficulty of hiring foreign workers and a high cost. Although there are tools that can be used to collect or transfer the proceeds of oil palm fruits such as carts available. However, these tools still have the disadvantage that requires high manpower to operate. Moreover, it is not suitable for all land surfaces and limited cargo space. Workload and manpower dependence has an impact on farmers' income