An Experiment on Bare-Metal BigData Provisioning

Many BigData customers use on-demand platforms in the cloud, where they can get a dedicated virtual cluster in a couple of minutes and pay only for the time they use. Increasingly, there is a demand for bare-metal bigdata solutions for applications that cannot tolerate the unpredictability and performance degradation of virtualized systems. Existing bare-metal solutions can introduce delays of 10s of minutes to provision a cluster by installing operating systems and applications on the local disks of servers. This has motivated recent research developing sophisticated mechanisms to optimize this installation. These approaches assume that using network mounted boot disks incur unacceptable run-time overhead. Our analysis suggest that while this assumption is true for application data, it is incorrect for operating systems and applications, and network mounting the boot disk and applications result in negligible run-time impact while leading to faster provisioning time.This research was supported in part by the MassTech Collaborative Research Matching Grant Program, NSF awards 1347525 and 1414119 and several commercial partners of the Massachusetts Open Cloud who may be found at http://www.massopencloud.or

The evolution of bits and bottlenecks in a scientific workflow trying to keep up with technology: Accelerating 4D image segmentation applied to nasa data

In 2016, a team of earth scientists directly engaged a team of computer scientists to identify cyberinfrastructure (CI) approaches that would speed up an earth science workflow. This paper describes the evolution of that workflow as the two teams bridged CI and an image segmentation algorithm to do large scale earth science research. The Pacific Research Platform (PRP) and The Cognitive Hardware and Software Ecosystem Community Infrastructure (CHASE-CI) resources were used to significantly decreased the earth science workflow's wall-clock time from 19.5 days to 53 minutes. The improvement in wall-clock time comes from the use of network appliances, improved image segmentation, deployment of a containerized workflow, and the increase in CI experience and training for the earth scientists. This paper presents a description of the evolving innovations used to improve the workflow, bottlenecks identified within each workflow version, and improvements made within each version of the workflow, over a three-year time period

From Bare Metal to Virtual: Lessons Learned when a Supercomputing Institute Deploys its First Cloud

As primary provider for research computing services at the University of Minnesota, the Minnesota Supercomputing Institute (MSI) has long been responsible for serving the needs of a user-base numbering in the thousands. In recent years, MSI---like many other HPC centers---has observed a growing need for self-service, on-demand, data-intensive research, as well as the emergence of many new controlled-access datasets for research purposes. In light of this, MSI constructed a new on-premise cloud service, named Stratus, which is architected from the ground up to easily satisfy data-use agreements and fill four gaps left by traditional HPC. The resulting OpenStack cloud, constructed from HPC-specific compute nodes and backed by Ceph storage, is designed to fully comply with controls set forth by the NIH Genomic Data Sharing Policy. Herein, we present twelve lessons learned during the ambitious sprint to take Stratus from inception and into production in less than 18 months. Important, and often overlooked, components of this timeline included the development of new leadership roles, staff and user training, and user support documentation. Along the way, the lessons learned extended well beyond the technical challenges often associated with acquiring, configuring, and maintaining large-scale systems.Comment: 8 pages, 5 figures, PEARC '18: Practice and Experience in Advanced Research Computing, July 22--26, 2018, Pittsburgh, PA, US

Extending DIRAC File Management with Erasure-Coding for efficient storage

The state of the art in Grid style data management is to achieve increased resilience of data via multiple complete replicas of data files across multiple storage endpoints. While this is effective, it is not the most space-efficient approach to resilience, especially when the reliability of individual storage endpoints is sufficiently high that only a few will be inactive at any point in time. We report on work performed as part of GridPP\cite{GridPP}, extending the Dirac File Catalogue and file management interface to allow the placement of erasure-coded files: each file distributed as N identically-sized chunks of data striped across a vector of storage endpoints, encoded such that any M chunks can be lost and the original file can be reconstructed. The tools developed are transparent to the user, and, as well as allowing up and downloading of data to Grid storage, also provide the possibility of parallelising access across all of the distributed chunks at once, improving data transfer and IO performance. We expect this approach to be of most interest to smaller VOs, who have tighter bounds on the storage available to them, but larger (WLCG) VOs may be interested as their total data increases during Run 2. We provide an analysis of the costs and benefits of the approach, along with future development and implementation plans in this area. In general, overheads for multiple file transfers provide the largest issue for competitiveness of this approach at present.Comment: 21st International Conference on Computing for High Energy and Nuclear Physics (CHEP2015

High-Performance Persistent Caching in Multi- and Hybrid- Cloud Environments

Il modello di lavoro noto come Multi Cloud sta emergendo come una naturale evoluzione del Cloud Computing per rispondere alle nuove esigenze di business delle aziende. Un tipico esempio è il modello noto come Cloud Ibrido dove si ha un Cloud Privato connesso ad un Cloud Pubblico per consentire alle applicazioni di scalare al bisogno e contemporaneamente rispondere ai bisogni di privacy, costi e sicurezza. Data la distribuzione dei dati su diverse strutture, quando delle applicazioni in esecuzione su un centro di calcolo devono utilizzare dati memorizzati remotamente, diventa necessario accedere alla rete che connette le diverse infrastrutture. Questo ha grossi impatti negativi su carichi di lavoro che consumano dati in modo intensivo e che di conseguenza vengono influenzati da ritardi dovuti alla bassa banda e latenza tipici delle connessioni di rete. Applicazioni di Intelligenza Artificiale e Calcolo Scientifico sono esempi di questo tipo di carichi di lavoro che, grazie all’uso sempre maggiore di acceleratori come GPU e FPGA, diventano capaci di consumare dati ad una velocità maggiore di quella con cui diventano disponibili. Implementare un livello di cache che fornisce e memorizza i dati di calcolo dal dispositivo di memorizzazione lento (remoto) a quello più veloce (ma costoso) dove i calcoli sono eseguiti, sembra essere la migliore soluzione per trovare il compromesso ottimale tra il costo dei dispositivi di memorizzazione offerti come servizi Cloud e la grande velocità di calcolo delle moderne applicazioni. Il sistema cache presentato in questo lavoro è stato sviluppato tenendo conto di tutte le peculiarità dei servizi di memorizzazione Cloud che fanno uso di API S3 per comunicare con i clienti. La soluzione proposta è stata ottenuta lavorando con il sistema di memorizzazione distribuito Ceph che implementa molti dei servizi caratterizzanti la semantica S3 ed inoltre, essendo pensato per lavorare su ambienti Cloud si inserisce bene in scenari Multi Cloud

Evaluation of Storage Systems for Big Data Analytics

abstract: Recent trends in big data storage systems show a shift from disk centric models to memory centric models. The primary challenges faced by these systems are speed, scalability, and fault tolerance. It is interesting to investigate the performance of these two models with respect to some big data applications. This thesis studies the performance of Ceph (a disk centric model) and Alluxio (a memory centric model) and evaluates whether a hybrid model provides any performance benefits with respect to big data applications. To this end, an application TechTalk is created that uses Ceph to store data and Alluxio to perform data analytics. The functionalities of the application include offline lecture storage, live recording of classes, content analysis and reference generation. The knowledge base of videos is constructed by analyzing the offline data using machine learning techniques. This training dataset provides knowledge to construct the index of an online stream. The indexed metadata enables the students to search, view and access the relevant content. The performance of the application is benchmarked in different use cases to demonstrate the benefits of the hybrid model.Dissertation/ThesisMasters Thesis Computer Science 201