Medical imaging analysis with artificial neural networks

Given that neural networks have been widely reported in the research community of medical imaging, we provide a focused literature survey on recent neural network developments in computer-aided diagnosis, medical image segmentation and edge detection towards visual content analysis, and medical image registration for its pre-processing and post-processing, with the aims of increasing awareness of how neural networks can be applied to these areas and to provide a foundation for further research and practical development. Representative techniques and algorithms are explained in detail to provide inspiring examples illustrating: (i) how a known neural network with fixed structure and training procedure could be applied to resolve a medical imaging problem; (ii) how medical images could be analysed, processed, and characterised by neural networks; and (iii) how neural networks could be expanded further to resolve problems relevant to medical imaging. In the concluding section, a highlight of comparisons among many neural network applications is included to provide a global view on computational intelligence with neural networks in medical imaging

A Two-stage Classification Method for High-dimensional Data and Point Clouds

High-dimensional data classification is a fundamental task in machine learning and imaging science. In this paper, we propose a two-stage multiphase semi-supervised classification method for classifying high-dimensional data and unstructured point clouds. To begin with, a fuzzy classification method such as the standard support vector machine is used to generate a warm initialization. We then apply a two-stage approach named SaT (smoothing and thresholding) to improve the classification. In the first stage, an unconstraint convex variational model is implemented to purify and smooth the initialization, followed by the second stage which is to project the smoothed partition obtained at stage one to a binary partition. These two stages can be repeated, with the latest result as a new initialization, to keep improving the classification quality. We show that the convex model of the smoothing stage has a unique solution and can be solved by a specifically designed primal-dual algorithm whose convergence is guaranteed. We test our method and compare it with the state-of-the-art methods on several benchmark data sets. The experimental results demonstrate clearly that our method is superior in both the classification accuracy and computation speed for high-dimensional data and point clouds.Comment: 21 pages, 4 figure

An Automatic Technique for MRI Based Murine Abdominal Fat Measurement

Because of the well-known relationship between obesity and high incidence of diseases, fat related research using mice models is being widely investigated in preclinical experiments. In the present study, we developed a technique to automatically measure mice abdominal adipose volume and determine the depot locations using Magnetic Resonance Imaging (MRI). Our technique includes an innovative method to detect fat tissues from MR images which not only utilizes the T1 weighted intensity information, but also takes advantage of the transverse relaxation time(T2) calculated from the multiple echo data. The technique contains both a fat optimized MRI imaging acquisition protocol that works well at 7T and a newly designed post processing methodology that can automatically accomplish the fat extraction and depot recognition without user intervention in the segmentation procedure. The post processing methodology has been integrated into easy-to-use software that we have made available via free download. The method was validated by comparing automated results with two independent manual analyses in 26 mice exhibiting different fat ratios from the obesity research project. The comparison confirms a close agreement between the results in total adipose tissue size and voxel-by-voxel overlaps

An Automatic Level Set Based Liver Segmentation from MRI Data Sets

A fast and accurate liver segmentation method is a challenging work in medical image analysis area. Liver segmentation is an important process for computer-assisted diagnosis, pre-evaluation of liver transplantation and therapy planning of liver tumors. There are several advantages of magnetic resonance imaging such as free form ionizing radiation and good contrast visualization of soft tissue. Also, innovations in recent technology and image acquisition techniques have made magnetic resonance imaging a major tool in modern medicine. However, the use of magnetic resonance images for liver segmentation has been slow when we compare applications with the central nervous systems and musculoskeletal. The reasons are irregular shape, size and position of the liver, contrast agent effects and similarities of the gray values of neighbor organs. Therefore, in this study, we present a fully automatic liver segmentation method by using an approximation of the level set based contour evolution from T2 weighted magnetic resonance data sets. The method avoids solving partial differential equations and applies only integer operations with a two-cycle segmentation algorithm. The efficiency of the proposed approach is achieved by applying the algorithm to all slices with a constant number of iteration and performing the contour evolution without any user defined initial contour. The obtained results are evaluated with four different similarity measures and they show that the automatic segmentation approach gives successful results