1,048 research outputs found
Mapping the epileptic brain with EEG dynamical connectivity: established methods and novel approaches
Several algorithms rooted in statistical physics, mathematics and machine learning are used to analyze neuroimaging data from patients suffering from epilepsy, with the main goals of localizing the brain region where the seizure originates from and of detecting upcoming seizure activity in order to trigger therapeutic neurostimulation devices. Some of these methods explore the dynamical connections between brain regions, exploiting the high temporal resolution of the electroencephalographic signals recorded at the scalp or directly from the cortical surface or in deeper brain areas. In this paper we describe this specific class of algorithms and their clinical application, by reviewing the state of the art and reporting their application on EEG data from an epileptic patient
Mutual Information in Frequency and its Application to Measure Cross-Frequency Coupling in Epilepsy
We define a metric, mutual information in frequency (MI-in-frequency), to
detect and quantify the statistical dependence between different frequency
components in the data, referred to as cross-frequency coupling and apply it to
electrophysiological recordings from the brain to infer cross-frequency
coupling. The current metrics used to quantify the cross-frequency coupling in
neuroscience cannot detect if two frequency components in non-Gaussian brain
recordings are statistically independent or not. Our MI-in-frequency metric,
based on Shannon's mutual information between the Cramer's representation of
stochastic processes, overcomes this shortcoming and can detect statistical
dependence in frequency between non-Gaussian signals. We then describe two
data-driven estimators of MI-in-frequency: one based on kernel density
estimation and the other based on the nearest neighbor algorithm and validate
their performance on simulated data. We then use MI-in-frequency to estimate
mutual information between two data streams that are dependent across time,
without making any parametric model assumptions. Finally, we use the MI-in-
frequency metric to investigate the cross-frequency coupling in seizure onset
zone from electrocorticographic recordings during seizures. The inferred
cross-frequency coupling characteristics are essential to optimize the spatial
and spectral parameters of electrical stimulation based treatments of epilepsy.Comment: This paper is accepted for publication in IEEE Transactions on Signal
Processing and contains 15 pages, 9 figures and 1 tabl
Dynamic causal modelling of electrographic seizure activity using Bayesian belief updating
AbstractSeizure activity in EEG recordings can persist for hours with seizure dynamics changing rapidly over time and space. To characterise the spatiotemporal evolution of seizure activity, large data sets often need to be analysed. Dynamic causal modelling (DCM) can be used to estimate the synaptic drivers of cortical dynamics during a seizure; however, the requisite (Bayesian) inversion procedure is computationally expensive. In this note, we describe a straightforward procedure, within the DCM framework, that provides efficient inversion of seizure activity measured with non-invasive and invasive physiological recordings; namely, EEG/ECoG. We describe the theoretical background behind a Bayesian belief updating scheme for DCM. The scheme is tested on simulated and empirical seizure activity (recorded both invasively and non-invasively) and compared with standard Bayesian inversion. We show that the Bayesian belief updating scheme provides similar estimates of time-varying synaptic parameters, compared to standard schemes, indicating no significant qualitative change in accuracy. The difference in variance explained was small (less than 5%). The updating method was substantially more efficient, taking approximately 5–10min compared to approximately 1–2h. Moreover, the setup of the model under the updating scheme allows for a clear specification of how neuronal variables fluctuate over separable timescales. This method now allows us to investigate the effect of fast (neuronal) activity on slow fluctuations in (synaptic) parameters, paving a way forward to understand how seizure activity is generated
Locally embedded presages of global network bursts
Spontaneous, synchronous bursting of neural population is a widely observed
phenomenon in nervous networks, which is considered important for functions and
dysfunctions of the brain. However, how the global synchrony across a large
number of neurons emerges from an initially non-bursting network state is not
fully understood. In this study, we develop a new state-space reconstruction
method combined with high-resolution recordings of cultured neurons. This
method extracts deterministic signatures of upcoming global bursts in "local"
dynamics of individual neurons during non-bursting periods. We find that local
information within a single-cell time series can compare with or even
outperform the global mean field activity for predicting future global bursts.
Moreover, the inter-cell variability in the burst predictability is found to
reflect the network structure realized in the non-bursting periods. These
findings demonstrate the deterministic mechanisms underlying the locally
concentrated early-warnings of the global state transition in self-organized
networks
Ranking Causal Influence of Financial Markets via Directed Information Graphs
A non-parametric method for ranking stock indices according to their mutual
causal influences is presented. Under the assumption that indices reflect the
underlying economy of a country, such a ranking indicates which countries exert
the most economic influence in an examined subset of the global economy. The
proposed method represents the indices as nodes in a directed graph, where the
edges' weights are estimates of the pair-wise causal influences, quantified
using the directed information functional. This method facilitates using a
relatively small number of samples from each index. The indices are then ranked
according to their net-flow in the estimated graph (sum of the incoming weights
subtracted from the sum of outgoing weights). Daily and minute-by-minute data
from nine indices (three from Asia, three from Europe and three from the US)
were analyzed. The analysis of daily data indicates that the US indices are the
most influential, which is consistent with intuition that the indices
representing larger economies usually exert more influence. Yet, it is also
shown that an index representing a small economy can strongly influence an
index representing a large economy if the smaller economy is indicative of a
larger phenomenon. Finally, it is shown that while inter-region interactions
can be captured using daily data, intra-region interactions require more
frequent samples.Comment: To be presented at Conference on Information Sciences and Systems
(CISS) 201
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